Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1076 ATGTCACCAACTCTAACACTCCACATCCTCTCCATCGTAGCCTCAACTCTCCCATTTTCCACACTCTCCCATTACTCCTCTTCATCCTCAACAACTCCTCCATCTCCAGAAACCGCACCCTCACTTTCGGATTGGAGATCCGCCCGAGCCACATACTACGCCGCCTCCGATCCCCGTGACGCCGTTGGCGGAGCCTGTGGATACGGAGATCTAGTAAAAGCAGGATATGGAATGGCCACTGTGGGATTGAGTGAGTCTCTATTTGAACGAGGACAGATCTGTGGCGCTTGCTTTCAGCTTAAATGTGTGGAAGATCTTCGTTGGTGTATACCTGGAACTTCTATTATTGTTACTGTTACTAATTTTTGTGCTCCTAATTATGGATTCACCGCTGAGGGTGGAGGCCATTGTAATCCTCCCAATAAGCATTTTGTAATTCCTATTGAAGCTTTTGAGAAGATTGCTATTTGGAAAGCCGGGAATATGCCTGTTCACTATCGGAGGATCAAATGCCGGAAAGAGGGGGGAGTCCGATATACAATTTCCGGTTTCGGCATCTACATCTCAATGCTGATAAGTAATGTTGCAGGTGCTGGAGATATTAGTGCTGTAAAGATCAAGGGATCAAGAACCGGTTGGCTTCCAATGGGTCGAAATTGGGGGCAAAACTGGCATATTAATGCTGATTTGAAAAATCAGCCCCTTTCCTTTGAAGTCACCAGCAGTGATGGAATAACTATCACATCCTATAATGTTGCTCCAAAGGATTGGAACTTTGGGCAGACTTTTGAAGGCAAGCAGTTTGAATCTTGA 813 45.76 MSPTLTLHILSIVASTLPFSTLSHYSSSSSTTPPSPETAPSLSDWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSESLFERGQICGACFQLKCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVIPIEAFEKIAIWKAGNMPVHYRRIKCRKEGGVRYTISGFGIYISMLISNVAGAGDISAVKIKGSRTGWLPMGRNWGQNWHINADLKNQPLSFEVTSSDGITITSYNVAPKDWNFGQTFEGKQFES 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38470875 38476011 + evm.model.ptg000009l.206 HCH10g1076 553149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1076 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 265 IPR007117 -
HCH10g1076 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 176 IPR007112 -
HCH10g1076 270 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576(InterPro)
HCH10g1076 270 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576(InterPro)
HCH10g1076 270 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576(InterPro)
HCH10g1076 270 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576(InterPro)
HCH10g1076 270 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576(InterPro)
HCH10g1076 270 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576(InterPro)
HCH10g1076 270 PANTHER EXPANSIN-A15 24 268 IPR002963 GO:0009664(InterPro)
HCH10g1076 270 Gene3D - 179 268 IPR036749 -
HCH10g1076 270 Pfam Expansin C-terminal domain 177 254 IPR007117 -
HCH10g1076 270 PRINTS Expansin signature 251 267 IPR002963 GO:0009664(InterPro)
HCH10g1076 270 PRINTS Expansin signature 75 89 IPR002963 GO:0009664(InterPro)
HCH10g1076 270 PRINTS Expansin signature 175 187 IPR002963 GO:0009664(InterPro)
HCH10g1076 270 PRINTS Expansin signature 102 113 IPR002963 GO:0009664(InterPro)
HCH10g1076 270 PRINTS Expansin signature 187 208 IPR002963 GO:0009664(InterPro)
HCH10g1076 270 PRINTS Expansin signature 115 125 IPR002963 GO:0009664(InterPro)
HCH10g1076 270 PRINTS Expansin signature 134 151 IPR002963 GO:0009664(InterPro)
HCH10g1076 270 PRINTS Expansin signature 222 243 IPR002963 GO:0009664(InterPro)
HCH10g1076 270 PRINTS Expansin signature 151 164 IPR002963 GO:0009664(InterPro)
HCH10g1076 270 Gene3D - 29 172 IPR036908 -
HCH10g1076 270 SMART dpbb_1 80 166 IPR007112 -
HCH10g1076 270 SUPERFAMILY PHL pollen allergen 173 265 IPR036749 -
HCH10g1076 270 SUPERFAMILY Barwin-like endoglucanases 41 194 IPR036908 -
HCH10g1076 270 CDD DPBB_EXPA_N 44 171 - -
HCH10g1076 270 Pfam Lytic transglycolase 81 166 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1076 HCH-Chr10:38470875 HCH13g0492 HCH-Chr13:3426508 1.50E-73 dispersed
HCH10g1076 HCH-Chr10:38470875 HCH2g1077 HCH-Chr2:53739421 1.30E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1076 - - - 0.0