Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1077 ATGTCTAAAGAAGAGATTATCATTTTAGATTGTTTACTCAGCCCTTTTTGCACAAGGGTGAAGATCGCATTGAATGAAAAGGGAGTGGCATACGAGAGTAGAGAAGAGGATTTGTTTGGAGGGAAAAGTGAGTTGTTGCTAAAATCTAATCCCATATACAAAAAAGTGCCTGTTCTCTTGCATAATGGTAAACCATTGAGTGAAAGTGCCATTATAGTAAACTATATTGAAGAGACCTGGCCTTCCCCCCCATTGCTTCCTTCTTGTGCATATGGAAGAGCTCAAGCTCGGTTTTGGGTTGATTACATTGACAAAAAGGTATTTGAAACGGGTGGCAAGATCTGGAGGAGCAATGGAGAAGAGCAAGAGGGTGCCTTAAAGGAATTCTTAGAGACTGTGAAGCAGTTAGAAGAAGCTCTGGGAGACAAGGATTTCTTTGGTGGTGACAGTTTTGGGTTCGTGGATGTTATTGCAATCCCAATTACCAGTTGGTTCCACGCTTACGAGAAAGTTGGAAACTTCAAAATAGAAGATCACTCTCCCAAATTTTCAGCCTGGCAAAACAGGTGTTTGCTGAGAGAGACTGTTGCCAGTGTCATCCCTGACTCTCAGAGGGTCTACGACTTTGTCATCTCCATGAGGAAGAAGTTTGGTCTCGAATAA 663 42.23 MSKEEIIILDCLLSPFCTRVKIALNEKGVAYESREEDLFGGKSELLLKSNPIYKKVPVLLHNGKPLSESAIIVNYIEETWPSPPLLPSCAYGRAQARFWVDYIDKKVFETGGKIWRSNGEEQEGALKEFLETVKQLEEALGDKDFFGGDSFGFVDVIAIPITSWFHAYEKVGNFKIEDHSPKFSAWQNRCLLRETVASVIPDSQRVYDFVISMRKKFGLE 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38552622 38553982 + evm.model.ptg000009l.207 HCH10g1077 553150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1077 220 Gene3D Glutaredoxin 1 88 - -
HCH10g1077 220 SFLD Main.3: Omega- and Tau-like 2 218 IPR045073 -
HCH10g1077 220 SUPERFAMILY GST C-terminal domain-like 78 217 IPR036282 -
HCH10g1077 220 SUPERFAMILY Thioredoxin-like 12 107 IPR036249 -
HCH10g1077 220 Pfam Glutathione S-transferase, C-terminal domain 121 186 - -
HCH10g1077 220 Gene3D - 90 220 - -
HCH10g1077 220 CDD GST_N_Tau 6 80 - -
HCH10g1077 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 209 IPR010987 -
HCH10g1077 220 CDD GST_C_Tau 90 210 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
HCH10g1077 220 FunFam Tau class glutathione S-transferase 1 88 - -
HCH10g1077 220 Coils Coil 119 139 - -
HCH10g1077 220 SFLD Main (cytGST) 2 218 - -
HCH10g1077 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 84 IPR004045 -
HCH10g1077 220 FunFam Glutathione S-transferase U20 89 220 - -
HCH10g1077 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 210 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
HCH10g1077 220 Pfam Glutathione S-transferase, N-terminal domain 9 78 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1077 HCH-Chr10:38552622 HCH6g0589 HCH-Chr6:34891142 2.30E-64 dispersed
HCH10g1077 HCH-Chr10:38552622 HCH3g0054 HCH-Chr3:322409 5.50E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1077 K00799 - csv:101213628 337.035