Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1097 ATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCATGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTTCTGGGACTCGTGTTGTTTACTTTCCTCAGGGTCATAGCGAACAGGTTGCTGCCACGACCAACAAAGAAGTTGATGGGCATATACCCAATTACCCGAACTTACCTCCCCAGCTGATATGTCAGCTTCACAATGTAACGATGCATGCAGATGTGGAAACGGATGAAGTTTATGCGCAAATGACATTACAGCCGTTGACCCCTCAAGAGCAAAAGGATACATTTCTACCGATGGAGTTGGGGATCCCGAGTAGACAGCCGACTAATTACTTTTGCAAGACGTTGACAGCAAGTGATACAAGCACCCATGGAGGGTTCTCTGTCCCTCGTCGTGCTGCAGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCGGCACAAGAGTTAATTGCAAGGGATCTCCATGATATCGAGTGGAAGTTTAGGCATATATTTCGAGGACAGCCAAAACGACATCTTCTTACTACTGGGTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGAGATTCTGTTCTTTTTATTTGGAATGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACACGACCACAGACTGTGATGCCATCGTCTGTTTTATCAAGTGATAGCATGCATATTGGACTCCTTGCTGCTGCTGCTCATGCTGCTGCAACTAATAGTTGTTTTACCGTTTTCTTTAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTTTGTCAAAATATGTTAAAGCTGTCTTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAGACAGAAGAGTCAAGTGTTCGAAGGTACATGGGTACTATAACAGGAATAAGTGATCTGGACCCTGTTCGTTGGCCTAGTTCTCACTGGCGATCTGTCAAGGTAGGGTGGGATGAATCAACAGCTGGTGAGAGGCAGCCAAGGGTATCATTGTGGGAAATTGAGCCTTTAACCACATTTCCTATGTATCCTTCTCTGTTTCCACTGAGACTGAAACGTCCTTGGCATCCTGGTGTCTCTTCTGTCCATGATAACAGAGATGATGCATCCAATGGCTTAATGTGGCTTCGGGGAGGAGCTGGGGAACAGGGTCTACACTCACTCAATTTCCAGTCCGTTGGCTCCCTTCCCTGGTTGCCGCAGAGACTTGATTCTTCCATGCTTGGAAATGATCATAATCAACAGTATCAAGCCATGTTGGCTGCTGGGATGCAAAACCATGGAGGTGTTGGTGTTGATATGCTGAGACAGCAAATCATGCACATTCAACAGCCTTTCCAATATATTCAACAGCCGGGCTTCCAGAATTCTATGCTGCAGCAGCAGCAGCAGCAGCAACTGGTTCAACAATCCATGCCCCAGAACATCCTGCAGGCACCAAGCCAAGTTATGGCTGAAAATATACCCCAACACATTCTTCAGCAATCCCTTCAAAATCAACCTGAGGATCTGCCAAACCAGCAACATCACACTTATAATGATGCCCTTCAGGTTCAAGGCAATCAATTTCATCAGGGTGGGCAGTCTAATGTGCCCTCACCCACATTTCCCAGAACAGACCTTATAGATTCAAACACTAATTACTCGGAGTCCATTACCTCTAGGCGAAACATACTTGCTTCATCATGTCCGGAAGGAATTGGCAATCTTTCCAATATCTATAGAAGTGGGCAGTCAATGTTAACTGAGCAGCTCTCCCAACAATCTCCTGTTTCTAAGAGTGCTCATTCACAGGTTGAAGCTCACCCGAACTCAATGTCCTTTCCACCATTTTCTGCTAGAGACTCAATTCTGGAGCTGGGAAATTGTAATTCGGATGCTCCTAGTCCTACACTTTTTGGTGTAAATATAGATTCATCTGGACTTCTACTTCCCACTAGTGTCGCCACGTTTGCTTCTCCGTCAATTGGTACTGATTCTTCCTCAATGCCATTGGGAGATTCTGGATTTCAAAGTTCTCTGTTCAATTGTGTCCAAGACTCTTCAGAGTTGTTGCACAGCTCAGAGCAAGTTGATCCATCAAATCCAACTCGGACATTTGTGAAGGTTTACAAGTCCGGATCTATCGGACGCTCACTAGACATCTCCCGCTTCAGCAGCTATCAGGAGCTGCGGGAGGAGCTGGCTCAGATGTTTGGAATCGAGGGACAGTTGGAAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGACGACCCTTGGGAGGCATTTGTCAATAATGTTTGGTATATAAAGATACTCTCACCCCAGGATTTTCAAAAACTAGGTGAGCAGGCAATCGAGTCCTTCAATCCTATTATCGGTCAGCGACTAACTAGTGGTGGCAGTGAAGCTGAAAATGTTCCCGGGCTACCATCGGTTGGATCGCTTGAATACTGA 2541 46.12 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLSKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPSSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWLRGGAGEQGLHSLNFQSVGSLPWLPQRLDSSMLGNDHNQQYQAMLAAGMQNHGGVGVDMLRQQIMHIQQPFQYIQQPGFQNSMLQQQQQQQLVQQSMPQNILQAPSQVMAENIPQHILQQSLQNQPEDLPNQQHHTYNDALQVQGNQFHQGGQSNVPSPTFPRTDLIDSNTNYSESITSRRNILASSCPEGIGNLSNIYRSGQSMLTEQLSQQSPVSKSAHSQVEAHPNSMSFPPFSARDSILELGNCNSDAPSPTLFGVNIDSSGLLLPTSVATFASPSIGTDSSSMPLGDSGFQSSLFNCVQDSSELLHSSEQVDPSNPTRTFVKVYKSGSIGRSLDISRFSSYQELREELAQMFGIEGQLEDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPQDFQKLGEQAIESFNPIIGQRLTSGGSEAENVPGLPSVGSLEY 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39547104 39576757 + evm.model.ptg000009l.227 HCH10g1097 553170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1097 846 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677(InterPro)
HCH10g1097 846 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
HCH10g1097 846 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 812 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH10g1097 846 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
HCH10g1097 846 ProSiteProfiles PB1 domain profile. 721 806 IPR053793 -
HCH10g1097 846 Gene3D - 292 364 - -
HCH10g1097 846 MobiDBLite consensus disorder prediction 605 628 - -
HCH10g1097 846 SUPERFAMILY CAD & PB1 domains 714 795 - -
HCH10g1097 846 CDD B3_DNA 127 228 IPR003340 GO:0003677(InterPro)
HCH10g1097 846 FunFam Auxin response factor 292 364 - -
HCH10g1097 846 FunFam Auxin response factor 126 230 - -
HCH10g1097 846 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
HCH10g1097 846 FunFam Auxin response factor 716 810 - -
HCH10g1097 846 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH10g1097 846 Gene3D - 717 810 - -
HCH10g1097 846 Gene3D - 126 230 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1097 HCH-Chr10:39547104 HCH3g0834 HCH-Chr3:6324251 1.80E-263 dispersed
HCH10g1097 HCH-Chr10:39547104 HCH14g1100 HCH-Chr14:37927991 8.30E-264 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32475 PF02309 AUX_IAA 7.80E-09 CL0072 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1097 K14486 - csv:101208098 1566.21