Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1103 ATGGCGAACCGATACTGGGTCGTCTCTTTACCGGTTCAAAGCTCGGCTTCTTCATTATGGAATCGTCTTCAAGAACAAATCTCTAAGCACTCTTTCGATACTCCTCTTTACAGATTCAACGTGCCTAATCTCCGTGTTGGAACGCTGGATTCGCTCCTTTCCCTTAGCGACGATCTCCTCAAGTCGAATAGCTTTGTGGAAGGAGTTTCTCACAAGATCCGACGGCAGATCGAGGAACTGGAGAAGGTTTCAGGTCTGGAAAGCAATGTTCTGTCGGTCGATGGAGTACCGGTCGATTCGTATCTCACTAGGTTTGTTTGGGATGAAGCCAAGTACCCGACGATGTCGCCTCTGAAAGACATCATTGATAGCATTCATAGTCAAGTGGCTAAGATTGAGGATGATCTTAAGATTCGTGTTTCTGAGTACAATAACGTGCGGAGTCAACTTAATGCCATAAATAGAAAGCAAAGTGGAAGCTTAGCAGTCCGTGATATTTCCAACCTTGTAAAACCGGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTTGTGATTGTTCCCAAGTACTCACAGAAAGAATGGCTATCTAGCTATGAAACATTGACTAGTTACGTGGTTCCCAGGTCTTCCAAGAAGTTATACGAGGATAATGAGTATGCTCTTTACACAGTAACACTCTTTAATCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGACAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGACAGTAGAAAGCAAGAGTTGCAAAAGCTGAGGCAAGACCAGGACAGTTTGAGAAGTTCTCTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCATTTTTGTGCTGTACGTGTTTTTGCTGAGAGTATTCTGAGATATGGTTTACCACCATCCTTTTTGGCAAGTGTTTTGGCACCAGCTGTAAAAAGTGAGAAGAAAGTTAGGTCAATCCTTGAAGGTTTATGTGACAGTGCAAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGCTAGCTGGTCTAGGAGGAGATTCTGATGCACACCCATATGTCTCCTTCACAATCAATCTTGTTTAA 1131 43.15 MANRYWVVSLPVQSSASSLWNRLQEQISKHSFDTPLYRFNVPNLRVGTLDSLLSLSDDLLKSNSFVEGVSHKIRRQIEELEKVSGLESNVLSVDGVPVDSYLTRFVWDEAKYPTMSPLKDIIDSIHSQVAKIEDDLKIRVSEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFNRVADNFKTSARDKGFQIREFEYSPEAQDSRKQELQKLRQDQDSLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPAVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGLAGLGGDSDAHPYVSFTINLV 376
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 39780394 39784773 - evm.model.ptg000009l.233 HCH10g1103 553176

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1103 376 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
HCH10g1103 376 SUPERFAMILY Vacuolar ATP synthase subunit C 1 375 IPR036132 GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro)
HCH10g1103 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH10g1103 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 375 IPR004907 GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH10g1103 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH10g1103 376 FunFam V-type proton ATPase subunit C 163 251 - -
HCH10g1103 376 Gene3D - 163 251 - -
HCH10g1103 376 Gene3D - 41 312 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1103 K02148 - - csv:101221574 692.96
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g0577 . 1 1001 Primary Pumps ATPases(2) AT1G10130 83.1 0.0e+00 1632.1
HCH2g1144 . 1 812 Primary Pumps ATPases(2) AT2G28520 80.7 0.0e+00 1333.9
HCH7g0534 . 12 815 Primary Pumps ATPases(2) AT2G28520 63.3 6.9e-300 1026.5
HCH4g0766 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-298 1022.3
HCH7g0534 . 6 820 Primary Pumps ATPases(2) AT2G21410 77.5 0.0e+00 1271.1
HCH4g0766 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.3 0.0e+00 1218.4
HCH2g1144 . 9 818 Primary Pumps ATPases(2) AT2G21410 61.9 2.1e-296 1015.0
HCH7g0534 . 1 820 Primary Pumps ATPases(2) AT4G39080 78.2 0.0e+00 1276.9
HCH4g0766 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.9 0.0e+00 1212.6
HCH2g1144 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.2 3.6e-296 1014.2
HCH4g0772 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH4g0773 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH4g0774 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH12g0811 . 28 165 Primary Pumps ATPases(2) AT4G34720 94.9 1.2e-58 222.6
HCH4g0774 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 7.7e-67 250.4
HCH4g0772 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
HCH4g0773 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
HCH12g0811 . 2 165 Primary Pumps ATPases(2) AT1G75630 77.3 1.2e-64 243.0
HCH4g0772 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0773 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0774 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
HCH12g0811 . 3 165 Primary Pumps ATPases(2) AT2G16510 94.5 1.9e-71 265.4
HCH4g0772 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.5e-52 201.4
HCH4g0773 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.5e-52 201.4
HCH4g0774 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.3e-52 201.1
HCH12g0811 . 1 122 Primary Pumps ATPases(2) AT1G19910 93.4 1.4e-50 195.7
HCH4g0410 . 9 180 Primary Pumps ATPases(2) AT2G25610 84.3 3.8e-70 261.5
HCH12g0344 . 10 148 Primary Pumps ATPases(2) AT2G25610 58.5 3.4e-39 158.7
HCH4g0772 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH4g0773 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH4g0774 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH12g0811 . 28 165 Primary Pumps ATPases(2) AT4G38920 94.9 3.4e-58 221.1
HCH4g0410 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 7.3e-76 280.4
HCH12g0344 . 1 148 Primary Pumps ATPases(2) AT4G32530 52.4 1.7e-40 162.9
HCH3g1300 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.9 0.0e+00 1684.5
HCH10g0972 . 9 1049 Primary Pumps ATPases(2) AT1G07810 65.0 0.0e+00 1302.3
HCH3g1300 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.7 0.0e+00 1683.7
HCH10g0972 . 9 1039 Primary Pumps ATPases(2) AT1G07670 65.7 0.0e+00 1304.3
HCH4g0577 . 1 1001 Primary Pumps ATPases(2) AT1G10130 83.1 0.0e+00 1632.1
HCH10g0972 . 2 1048 Primary Pumps ATPases(2) AT4G00900 77.6 0.0e+00 1608.6
HCH3g1300 . 22 1061 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1318.5
HCH5g0059 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 7.1e-58 219.9
HCH5g0791 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 7.1e-58 219.9
HCH7g0450 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.5 1.7e-269 924.9
HCH2g0574 . 1 485 Primary Pumps ATPases(2) AT1G76030 96.1 9.3e-268 919.1
HCH10g1051 . 1 88 Primary Pumps ATPases(2) AT1G76030 90.9 4.8e-38 156.0
HCH10g1103 . 1 375 Primary Pumps ATPases(2) AT1G12840 81.3 1.8e-178 622.1
HCH7g0068 . 1 260 Primary Pumps ATPases(2) AT3G58730 82.0 6.8e-116 413.7
HCH13g1155 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 2.9e-207 718.0
HCH4g0772 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0773 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0774 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
HCH12g0811 . 3 165 Primary Pumps ATPases(2) AT2G16510 94.5 1.9e-71 265.4
HCH7g0450 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 7.0e-271 929.5
HCH2g0574 . 1 488 Primary Pumps ATPases(2) AT4G38510 96.1 3.5e-270 927.2
HCH10g1051 . 1 88 Primary Pumps ATPases(2) AT4G38510 92.0 7.5e-39 158.7
HCH4g1835 . 1 183 Primary Pumps ATPases(2) AT1G64200 76.8 6.4e-71 263.8
HCH1g0343 . 1 183 Primary Pumps ATPases(2) AT1G64200 76.8 1.1e-70 263.1
HCH4g1852 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.3 7.9e-69 256.9
HCH1g0194 . 1 127 Primary Pumps ATPases(2) AT1G64200 62.1 4.1e-41 164.9
HCH2g0574 . 12 485 Primary Pumps ATPases(2) AT1G20260 97.5 9.3e-268 919.1
HCH7g0450 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 7.9e-267 916.0
HCH2g1144 . 1 812 Primary Pumps ATPases(2) AT2G28520 80.7 0.0e+00 1333.9
HCH7g0534 . 12 815 Primary Pumps ATPases(2) AT2G28520 63.3 6.9e-300 1026.5
HCH4g0766 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-298 1022.3
HCH9g0213 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.5 6.5e-191 663.3
HCH1g0343 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.8 4.6e-92 334.3
HCH4g1835 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 1.0e-91 333.2
HCH4g1852 . 1 219 Primary Pumps ATPases(2) AT4G11150 76.8 5.0e-86 314.3
HCH1g0194 . 1 144 Primary Pumps ATPases(2) AT4G11150 51.5 2.0e-42 169.5
HCH9g0940 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.4 0.0e+00 1171.0
HCH7g0450 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.5 1.7e-269 924.9
HCH2g0574 . 1 485 Primary Pumps ATPases(2) AT1G76030 96.1 9.3e-268 919.1
HCH10g1051 . 1 88 Primary Pumps ATPases(2) AT1G76030 90.9 4.8e-38 156.0
HCH7g0450 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 7.0e-271 929.5
HCH2g0574 . 1 488 Primary Pumps ATPases(2) AT4G38510 96.1 3.5e-270 927.2
HCH10g1051 . 1 88 Primary Pumps ATPases(2) AT4G38510 92.0 7.5e-39 158.7
HCH2g0574 . 12 485 Primary Pumps ATPases(2) AT1G20260 97.5 9.3e-268 919.1
HCH7g0450 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 7.9e-267 916.0
HCH10g1103 . 1 375 Primary Pumps ATPases(2) AT1G12840 81.3 1.8e-178 622.1
HCH7g0068 . 1 260 Primary Pumps ATPases(2) AT3G58730 82.0 6.8e-116 413.7
HCH1g0343 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.8 4.6e-92 334.3
HCH4g1835 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 1.0e-91 333.2
HCH4g1852 . 1 219 Primary Pumps ATPases(2) AT4G11150 76.8 5.0e-86 314.3
HCH1g0194 . 1 144 Primary Pumps ATPases(2) AT4G11150 51.5 2.0e-42 169.5
HCH1g0343 . 1 225 Primary Pumps ATPases(2) AT3G08560 69.7 4.3e-77 284.6
HCH4g1835 . 1 223 Primary Pumps ATPases(2) AT3G08560 70.3 5.6e-77 284.3
HCH4g1852 . 1 219 Primary Pumps ATPases(2) AT3G08560 68.4 4.9e-73 271.2
HCH4g1835 . 1 183 Primary Pumps ATPases(2) AT1G64200 76.8 6.4e-71 263.8
HCH1g0343 . 1 183 Primary Pumps ATPases(2) AT1G64200 76.8 1.1e-70 263.1
HCH4g1852 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.3 7.9e-69 256.9
HCH1g0194 . 1 127 Primary Pumps ATPases(2) AT1G64200 62.1 4.1e-41 164.9
HCH5g0059 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 7.1e-58 219.9
HCH5g0791 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 7.1e-58 219.9
HCH13g1155 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 2.9e-207 718.0
HCH2g1144 . 1 812 Primary Pumps ATPases(2) AT2G28520 80.7 0.0e+00 1333.9
HCH7g0534 . 12 815 Primary Pumps ATPases(2) AT2G28520 63.3 6.9e-300 1026.5
HCH4g0766 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-298 1022.3
HCH7g0534 . 6 820 Primary Pumps ATPases(2) AT2G21410 77.5 0.0e+00 1271.1
HCH4g0766 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.3 0.0e+00 1218.4
HCH2g1144 . 9 818 Primary Pumps ATPases(2) AT2G21410 61.9 2.1e-296 1015.0
HCH7g0534 . 1 820 Primary Pumps ATPases(2) AT4G39080 78.2 0.0e+00 1276.9
HCH4g0766 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.9 0.0e+00 1212.6
HCH2g1144 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.2 3.6e-296 1014.2
HCH4g0772 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH4g0773 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH4g0774 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH12g0811 . 28 165 Primary Pumps ATPases(2) AT4G34720 94.9 1.2e-58 222.6
HCH4g0772 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.5e-52 201.4
HCH4g0773 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.5e-52 201.4
HCH4g0774 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.3e-52 201.1
HCH12g0811 . 1 122 Primary Pumps ATPases(2) AT1G19910 93.4 1.4e-50 195.7
HCH4g0772 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH4g0773 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH4g0774 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH12g0811 . 28 165 Primary Pumps ATPases(2) AT4G38920 94.9 3.4e-58 221.1
HCH4g0774 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 7.7e-67 250.4
HCH4g0772 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
HCH4g0773 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
HCH12g0811 . 2 165 Primary Pumps ATPases(2) AT1G75630 77.3 1.2e-64 243.0
HCH4g0772 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0773 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0774 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
HCH12g0811 . 3 165 Primary Pumps ATPases(2) AT2G16510 94.5 1.9e-71 265.4
HCH4g0410 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 7.3e-76 280.4
HCH12g0344 . 1 148 Primary Pumps ATPases(2) AT4G32530 52.4 1.7e-40 162.9
HCH4g0410 . 9 180 Primary Pumps ATPases(2) AT2G25610 84.3 3.8e-70 261.5
HCH12g0344 . 10 148 Primary Pumps ATPases(2) AT2G25610 58.5 3.4e-39 158.7
HCH9g0213 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.0 3.9e-199 690.6
HCH9g0213 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.5 6.5e-191 663.3
HCH3g1300 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.9 0.0e+00 1684.5
HCH10g0972 . 9 1049 Primary Pumps ATPases(2) AT1G07810 65.0 0.0e+00 1302.3
HCH10g0972 . 2 1048 Primary Pumps ATPases(2) AT4G00900 77.6 0.0e+00 1608.6
HCH3g1300 . 22 1061 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1318.5
HCH4g0577 . 1 1001 Primary Pumps ATPases(2) AT1G10130 83.1 0.0e+00 1632.1
HCH3g1300 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.7 0.0e+00 1683.7
HCH10g0972 . 9 1039 Primary Pumps ATPases(2) AT1G07670 65.7 0.0e+00 1304.3
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007861 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36