Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g1103 | ATGGCGAACCGATACTGGGTCGTCTCTTTACCGGTTCAAAGCTCGGCTTCTTCATTATGGAATCGTCTTCAAGAACAAATCTCTAAGCACTCTTTCGATACTCCTCTTTACAGATTCAACGTGCCTAATCTCCGTGTTGGAACGCTGGATTCGCTCCTTTCCCTTAGCGACGATCTCCTCAAGTCGAATAGCTTTGTGGAAGGAGTTTCTCACAAGATCCGACGGCAGATCGAGGAACTGGAGAAGGTTTCAGGTCTGGAAAGCAATGTTCTGTCGGTCGATGGAGTACCGGTCGATTCGTATCTCACTAGGTTTGTTTGGGATGAAGCCAAGTACCCGACGATGTCGCCTCTGAAAGACATCATTGATAGCATTCATAGTCAAGTGGCTAAGATTGAGGATGATCTTAAGATTCGTGTTTCTGAGTACAATAACGTGCGGAGTCAACTTAATGCCATAAATAGAAAGCAAAGTGGAAGCTTAGCAGTCCGTGATATTTCCAACCTTGTAAAACCGGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTTGTGATTGTTCCCAAGTACTCACAGAAAGAATGGCTATCTAGCTATGAAACATTGACTAGTTACGTGGTTCCCAGGTCTTCCAAGAAGTTATACGAGGATAATGAGTATGCTCTTTACACAGTAACACTCTTTAATCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGACAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGACAGTAGAAAGCAAGAGTTGCAAAAGCTGAGGCAAGACCAGGACAGTTTGAGAAGTTCTCTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCATTTTTGTGCTGTACGTGTTTTTGCTGAGAGTATTCTGAGATATGGTTTACCACCATCCTTTTTGGCAAGTGTTTTGGCACCAGCTGTAAAAAGTGAGAAGAAAGTTAGGTCAATCCTTGAAGGTTTATGTGACAGTGCAAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGCTAGCTGGTCTAGGAGGAGATTCTGATGCACACCCATATGTCTCCTTCACAATCAATCTTGTTTAA | 1131 | 43.15 | MANRYWVVSLPVQSSASSLWNRLQEQISKHSFDTPLYRFNVPNLRVGTLDSLLSLSDDLLKSNSFVEGVSHKIRRQIEELEKVSGLESNVLSVDGVPVDSYLTRFVWDEAKYPTMSPLKDIIDSIHSQVAKIEDDLKIRVSEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFNRVADNFKTSARDKGFQIREFEYSPEAQDSRKQELQKLRQDQDSLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPAVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGLAGLGGDSDAHPYVSFTINLV | 376 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 39780394 | 39784773 | - | evm.model.ptg000009l.233 | HCH10g1103 | 553176 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g1103 | 376 | Gene3D | Vacuolar atp synthase subunit c; domain 1 | 5 | 334 | - | - | |
| HCH10g1103 | 376 | SUPERFAMILY | Vacuolar ATP synthase subunit C | 1 | 375 | IPR036132 | GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro) | |
| HCH10g1103 | 376 | Pfam | V-ATPase subunit C | 5 | 369 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| HCH10g1103 | 376 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C | 1 | 375 | IPR004907 | GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| HCH10g1103 | 376 | CDD | V-ATPase_C | 5 | 373 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| HCH10g1103 | 376 | FunFam | V-type proton ATPase subunit C | 163 | 251 | - | - | |
| HCH10g1103 | 376 | Gene3D | - | 163 | 251 | - | - | |
| HCH10g1103 | 376 | Gene3D | - | 41 | 312 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g1103 | K02148 | - | csv:101221574 | 692.96 |