Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1104 ATGATGATGATGATGATGGAGCAAGATCAGGATAAGCTTCTTGAGCCTGCTGCCACCAGTAGTAGTACTTCTGCGGTGGTCGTCGCGGTGGCTGATCGTGTCGGATCTTCTTCTGACCTTGTCTCCGCCGTGTCGGGATTTGGTGTCCATCGGAAGAAAAGGATGGCTAGACAGAGGCGATCTCCTACTAATATTAACCTTCAGTTCTCTTTTCCTTCTTCTTCCACCACTTCGCACGTGCCTCACTCACTCCAACTCCACCTCCAAGATCCTTCCACTCTTCATCCCGCACGTGTAATTGATCCAAGGAGGCTGAAATTCCTTTTCCAGAAGGAGCTCAAGAACAGTGATGTTAGCTCCCTTAGAAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTTCCAGCATTAGAGTCTAAAGAAGGGATTCTTATCAGCATGGATGACTTGGATGGTGTGCATGTGTGGAGCTTTAAATACAGGTTTTGGCCTAATAACAATAGCAGAATGTATGTACTAGAAAATACTGTTTTGACAGGGGACTTTGTCAATGCTCATGGCTTACAACTTGGAGATTTCATCATGGTTTACCAAGATTACCAGAATCACAACTATGTCATTCAAGCGAAAAAGGCCTCTGATCAAGAAATATATTCGGACATAGCCAAGAATGTCGTGATCAACGACGTTCTTCTTCACGACTATGACATTAACAAGGCCAACTCAATTTATGTGCCATATCCCACCGTGGATGACCCCGGGATGTCATTCATCTACGATACCAGCTCTGCCTTTGCAAATGATTCACCATTTGATTTTTTGGGCGGATCAATGACCAACTACTCGAGAATGGGAGCTCTCGAAGGTTTTGGATCGGTCGAGAACTTATCTCTCGATGACTTTTATTAG 912 44.63 MMMMMMEQDQDKLLEPAATSSSTSAVVVAVADRVGSSSDLVSAVSGFGVHRKKRMARQRRSPTNINLQFSFPSSSTTSHVPHSLQLHLQDPSTLHPARVIDPRRLKFLFQKELKNSDVSSLRRMILPKKAAETHLPALESKEGILISMDDLDGVHVWSFKYRFWPNNNSRMYVLENTVLTGDFVNAHGLQLGDFIMVYQDYQNHNYVIQAKKASDQEIYSDIAKNVVINDVLLHDYDINKANSIYVPYPTVDDPGMSFIYDTSSAFANDSPFDFLGGSMTNYSRMGALEGFGSVENLSLDDFY 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39841895 39846687 - evm.model.ptg000009l.234 HCH10g1104 553177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1104 303 SUPERFAMILY DNA-binding pseudobarrel domain 107 208 IPR015300 -
HCH10g1104 303 SMART B3_2 109 214 IPR003340 GO:0003677(InterPro)
HCH10g1104 303 CDD B3_DNA 107 212 IPR003340 GO:0003677(InterPro)
HCH10g1104 303 Gene3D - 105 226 IPR015300 -
HCH10g1104 303 Pfam B3 DNA binding domain 109 209 IPR003340 GO:0003677(InterPro)
HCH10g1104 303 ProSiteProfiles B3 DNA-binding domain profile. 109 214 IPR003340 GO:0003677(InterPro)
HCH10g1104 303 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 42 213 IPR044800 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1104 HCH-Chr10:39841895 HCH5g0977 HCH-Chr5:9080309 2.70E-31 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32477 PF02362 B3 1.80E-15 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1104 K09287 - csv:101222512 353.599