Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1107 ATGGCGTTCTCCGATAAACCCTCACGCCAATCTCTAATCCCAAGCTTCCTTTACTCTTCTCCTTCTTCCTCTAAAACCCTACCTCTTAACAAAATGCTTCATTCAACAAATTCTCCAACCCTAGAAAATTCTTCTTCCTCTCGAAAGAGCTTCGTTATTCCGGCACCGAGCGAACCCAGAAGCGGAAAGATCGAGATGTATTCTCCGGCTTTCTACACCGCTTGTACTTTTGGTGGAATCTTAAGTTGTGGTCTCACTCATATGACTGTCACTCCTCTTGATCTGGTTAAATGTAATATGCAGATCGACCCTACAAAATACAAAAGCATTTCGTCAGGTTTTGGAATTTTGCTCAGGGAGCAAGGCGTTAAAGGTTTCTTTAGAGGTTGGGTGCCTACCTTGCTTGGTTACAGCGCACAGGGTGCTTGCAAGTTTGGTTTCTATGAGTTCTTTAAGAAGTATTACTCTGACATTGCTGGACCTGAGTATGCGGCTAAGTACAAAACCTTGATCTACCTTGCTGGCTCTGCATCTGCTGAGGTGATTGCAGATGTTGCACTTTGCCCTTTCGAAGCAGTGAAGGTTCGAGTTCAAACGCAGCCTGGTTTTGCCAGAGGACTAGGAGATGGCTTACCCAAGTTTATTAAGTCTGAAGGAGCTCTGGGGTTGTACAAGGGCATCGTTCCTCTTTGGGGACGCCAGATTCCATATACAATGATGAAGTTTGCATCATTCGAGACAATAGTTGAGATGATCTACAAGTATGGCGTTCCCACACCAAAGGACCAATGCAGCAAATCACTCCAGCTTGGTATTAGTTTTGCCGGTGGATATGTGGCTGGTGTTTTGTGTGCTATAGTGTCTCATCCTGCCGACAATCTTGTCTCGTTTCTGAACAATGCCAAAGGAGCAACTGTTGGTGATGCTGTGAAGAAGCTTGGATTGTGGGGTCTCTTTACCCGTGGCCTACCCCTCCGTATCGTTATGATCGGAACTCTCACCGGTGCTCAGTGGGGTCTTTATGATGCATTTAAAGTTTTTGTTGGACTGCCTACAACTGGTGGTGCTGCTCCTGTTGCCGCCCCTACCGATCTCACAAAGGTGTAA 1107 46.07 MAFSDKPSRQSLIPSFLYSSPSSSKTLPLNKMLHSTNSPTLENSSSSRKSFVIPAPSEPRSGKIEMYSPAFYTACTFGGILSCGLTHMTVTPLDLVKCNMQIDPTKYKSISSGFGILLREQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLGDGLPKFIKSEGALGLYKGIVPLWGRQIPYTMMKFASFETIVEMIYKYGVPTPKDQCSKSLQLGISFAGGYVAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGLYDAFKVFVGLPTTGGAAPVAAPTDLTKV 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39933320 39938779 - evm.model.ptg000009l.237 HCH10g1107 553180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1107 368 MobiDBLite consensus disorder prediction 1 59 - -
HCH10g1107 368 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 45 356 IPR044677 GO:0005315(PANTHER)|GO:0005315(InterPro)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
HCH10g1107 368 FunFam Phosphate carrier protein, mitochondrial 70 348 - -
HCH10g1107 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 70 154 IPR018108 -
HCH10g1107 368 Pfam Mitochondrial carrier protein 168 255 IPR018108 -
HCH10g1107 368 Pfam Mitochondrial carrier protein 72 157 IPR018108 -
HCH10g1107 368 SUPERFAMILY Mitochondrial carrier 73 343 IPR023395 -
HCH10g1107 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 268 347 IPR018108 -
HCH10g1107 368 MobiDBLite consensus disorder prediction 1 52 - -
HCH10g1107 368 Gene3D Mitochondrial carrier domain 71 348 IPR023395 -
HCH10g1107 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 167 251 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1107 HCH-Chr10:39933320 HCH9g0028 HCH-Chr9:172362 2.30E-162 dispersed
HCH10g1107 HCH-Chr10:39933320 HCH10g0148 HCH-Chr10:1224547 1.20E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1107 K15102 - csv:101221771 636.336