Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1115 ATGTCTTCTTTTTCTTCTTCTTTTTCGTGGTTCATTTTCTTTTCTCTCTCATTAACTCTCTCTGAATCCATTTCCAACGATGCAATATCTCTTTTAGCCTTCAAAGATTCTCTCTCTCTTAACCCTACTTCTAATCTCCTCTCTAATTGGAACTTCTCCACTTCTCATTGCAATTGGTACGGCGTTTCCTGTAACGCCGTTAATGACAGAGTTATTGCATTGAATATCACCGGAAGTACAACGCCGTTATCTTTTCTCGCCGGGACATTGTCTCCTTCGATTGGAAATCTCACTTTTCTTCGAGTTTTGGCGCTTCGTTATAATCTAATCCATGGGGGAATTCCTGCAACTATTGGTAAGCTTCAGTTTTTGGAGATTCTTGAACTTCAAGGGAATAATTTCTCCGGGAAGATTCCGAAACAGATAAGCCGTTTTCAATCTCTTCGGTTGCTTAATTTATCGAGTAATATGTTTTCGGGTTCGATACCGAGTAAATTGATTGGTTTGTGGAAATTGGAAGTGATTGATTTGTCATATAATCGACTTTCTGGTAGGATTAGAGTTGTTTATAAGGGTTGTGACGTTTTGAATCATTTGAGGCTTTCACATAATTTTTTGACTGAGGGTATTCCGGCTGAGATTGGCAAATGTTGGAATTTGAGGACTTTGTTGCTTGATGGGAATATATTAGAGGGTCGAATTCCGGCTGAGATTGGTCAGATTTCGGAACTTAGAATTCTTGATGTTTCAAGAAATAGCCTTACTGATACGGTACCGAAAGAGCTCGGTAATTGTCGGAGGTTATCGGTGATTGTGTTGACGAATTTGGACGATTTTGGTTCCGATGAGGATAGTTCAGGTGATAAGTTAAGAGGGGAATTCAATGCTTTCAATGGAGGTATACCTTCTGAGTTGTTGTTGATTCCTGGTCTGCAAGTTTTTTGGGCACCTAGAGCTAATTTTGGTGGCAAATTGCCCAGAAATTGGAGTTCTTTATGCTTACTCAGAGTGCTCAATTTGGGGCAGAATTACATTACTGGTACTATACCTGAAACAATGGGGGTGTGCAGAAATATCACTTACCTGGATTTATCTTCTAACAATTTAGAAGGCAATCTCCCTATGCAGCTAAGAGTTCCATGTATGGTGTATTTCAATGTTAGCAAGAACAAAATATCCGGTTTGCTTCCTAGATTTGAGAAAGTCGGTTTTTGTATGAGCATGGATCATAACTTCTTTGATAAGGAAGATGCTTACTTTTATGTTCCTGTTTGGGATTTCCTGATAAGTACTCTACCTGGGTTTGGATTGAACGATAATCTTGTAATTGCTCATGATTTTAGTTGGAATAGATTTAGTGGTCCATTAACTTCTTTCAAACTGAGAGATGAGTTTTTGGCTGATGGCAGCAAATTGTCATACAGATTGTTGCTTAATAGTAATGAGTTCAATGGATCATTTCCAACTGATCTGGTCTCAAACTGTAATGATATGGAGAGTGTTTCTGTAAACTTGAGTGCAAACTTTGTATCAGGTGTGATTTATGATGCATTTTTTGTTCATTGTCAACAGATGATGGAGTTTGAGGCAGCAAGCAATTTGTTAGATGATTCAATTGGGCCTGGTATTGGTGACTTGCCGATGCTTCTTCGTCTCGACTTGAGAAGAAACAGGTTATCTGGATTTTTGCCAGTTCAGTTAGGGAAGTTAAAAAATTTGAAATGGATGCTTCTGGGGGGCAACAACTTTACTGGAGAAATTCCATCTCAACTTGATCAATTGACTTCTCTCACAGTCTTAGATCTTTCTCGAAACGTGATTACAGGAGTTATCCCTGAAAGCTTGGCGTATGCCTCAAGACTTGAGATTCTGTTGCTTGATCATAACAGATTAACTGGGGAAATACCCTCATCTTTCTCTACTATGTCTAGTCTTACTAAATTGGATGTTTCTTTTAACAACCTCTCGGGGCACATTCCCCATCTTCAGCACATGATTGAGTGCAGTTACTTTAGTGGGAATAAATTTCTGCATCCTTGCCCAGATTCATATTCTGATTCCCCAGCTGGGCTTCCAGTTCCACTTGAAGTTCAAAAGTGGAAGAAACAGAGAAAATTCCAGTTCATGATAATTGCTGTGGTTACTTCTTCGACTTTAGTCTGCCTACTCCTAATGATAGCTCTTATCATTTTTGGGAAGAAAAGGCTTTGTAGAAACACTAAGCTAAAGAGGAAACTGGTGGCGACTTTTTCGGATGCCCCATCTGAATTGAATTACGATAACGTGGTCAGAGCTACAGAAAATTTCAGCCTTCGCTACCTAATTGGTACTGGTGGGTTCGGGTCAACCTACAAGGCAGAACTGCCCTCAGGTTTCCTGGTTGCAGTAAAGAGGCTATCCATTGGTAGGTTTCAAGGCATTCAACAATTTGATGCAGAGATTCGAACATTGGGAAGAATACGACACAGGAACCTTGTAACTCTTCTTGGATATTATGTGGGAGAGACTGAAATGTTCTTAGTTTACAACTATCTGTCGGGAGGGAACCTCGAAACCTTCATCCACGAAAAATCTTGTAAACGGGTAAAGCACTCGGTGATTCACAAGATTGCTTTGCACATAGCAAGGGCCCTAGCATACCTTCATTACTCCTGTGTTCCTAGGATTGTACATAGAGACATCAAACCAAGTAACATCCTGCTTGATGAAGAGCACAACACCTATATATCAGATTTTGGATTGGCCAGGCTCCTTGAAGTTTCTGAGACTCACGCTACTACCGATGTGGCAGGAACATTCGGATATGTCGCACCGGAATACGCTACAACATGCCGGGTTTCAGACAAGGCAGATGTTTATAGCTTTGGTGTTGTGCTCTTAGAATTGCTTTCTGGGAAAAAGTCACTTGATCCATCCTTTTCTGAGTTTGGTAATGGATTCAATATTGTGACATGGGCAAAGTTGCTGATCAAGGAAGGTCGTTCTTCCGAGCTTTTCATACCCGAGTTGTGGGAAATCGGGCCATCGGAAAACCTTCTCGGAATGTTAAAGCTTGCAGCTACTTGCACAGTTGAAACTCTCTCTCTTCGACCATCTATGAAGCAGGTGGTTGAGACATTGAAGCAGCTGTAA 3132 40.52 MSSFSSSFSWFIFFSLSLTLSESISNDAISLLAFKDSLSLNPTSNLLSNWNFSTSHCNWYGVSCNAVNDRVIALNITGSTTPLSFLAGTLSPSIGNLTFLRVLALRYNLIHGGIPATIGKLQFLEILELQGNNFSGKIPKQISRFQSLRLLNLSSNMFSGSIPSKLIGLWKLEVIDLSYNRLSGRIRVVYKGCDVLNHLRLSHNFLTEGIPAEIGKCWNLRTLLLDGNILEGRIPAEIGQISELRILDVSRNSLTDTVPKELGNCRRLSVIVLTNLDDFGSDEDSSGDKLRGEFNAFNGGIPSELLLIPGLQVFWAPRANFGGKLPRNWSSLCLLRVLNLGQNYITGTIPETMGVCRNITYLDLSSNNLEGNLPMQLRVPCMVYFNVSKNKISGLLPRFEKVGFCMSMDHNFFDKEDAYFYVPVWDFLISTLPGFGLNDNLVIAHDFSWNRFSGPLTSFKLRDEFLADGSKLSYRLLLNSNEFNGSFPTDLVSNCNDMESVSVNLSANFVSGVIYDAFFVHCQQMMEFEAASNLLDDSIGPGIGDLPMLLRLDLRRNRLSGFLPVQLGKLKNLKWMLLGGNNFTGEIPSQLDQLTSLTVLDLSRNVITGVIPESLAYASRLEILLLDHNRLTGEIPSSFSTMSSLTKLDVSFNNLSGHIPHLQHMIECSYFSGNKFLHPCPDSYSDSPAGLPVPLEVQKWKKQRKFQFMIIAVVTSSTLVCLLLMIALIIFGKKRLCRNTKLKRKLVATFSDAPSELNYDNVVRATENFSLRYLIGTGGFGSTYKAELPSGFLVAVKRLSIGRFQGIQQFDAEIRTLGRIRHRNLVTLLGYYVGETEMFLVYNYLSGGNLETFIHEKSCKRVKHSVIHKIALHIARALAYLHYSCVPRIVHRDIKPSNILLDEEHNTYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKKSLDPSFSEFGNGFNIVTWAKLLIKEGRSSELFIPELWEIGPSENLLGMLKLAATCTVETLSLRPSMKQVVETLKQL 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40080534 40083665 - evm.model.ptg000009l.245 HCH10g1115 553188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1115 1043 SMART serkin_6 769 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g1115 1043 FunFam Leucine-rich repeat receptor-like protein kinase 24 188 - -
HCH10g1115 1043 ProSitePatterns Protein kinases ATP-binding region signature. 775 797 IPR017441 GO:0005524(InterPro)
HCH10g1115 1043 Gene3D Ribonuclease Inhibitor 427 691 IPR032675 -
HCH10g1115 1043 Gene3D Ribonuclease Inhibitor 285 417 IPR032675 -
HCH10g1115 1043 Gene3D Transferase(Phosphotransferase) domain 1 845 1043 - -
HCH10g1115 1043 SUPERFAMILY L domain-like 297 678 - -
HCH10g1115 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g1115 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 733 844 - -
HCH10g1115 1043 Pfam Protein kinase domain 774 1037 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g1115 1043 Gene3D Ribonuclease Inhibitor 192 280 IPR032675 -
HCH10g1115 1043 Gene3D Ribonuclease Inhibitor 24 191 IPR032675 -
HCH10g1115 1043 SMART LRR_typ_2 332 356 IPR003591 -
HCH10g1115 1043 SMART LRR_typ_2 594 617 IPR003591 -
HCH10g1115 1043 SMART LRR_typ_2 97 121 IPR003591 -
HCH10g1115 1043 SMART LRR_typ_2 145 169 IPR003591 -
HCH10g1115 1043 SMART LRR_typ_2 546 570 IPR003591 -
HCH10g1115 1043 SMART LRR_typ_2 642 664 IPR003591 -
HCH10g1115 1043 SMART LRR_typ_2 241 265 IPR003591 -
HCH10g1115 1043 Pfam Leucine rich repeat 591 631 IPR001611 GO:0005515(InterPro)
HCH10g1115 1043 Gene3D Phosphorylase Kinase; domain 1 731 844 - -
HCH10g1115 1043 ProSiteProfiles Protein kinase domain profile. 769 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g1115 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 845 1043 - -
HCH10g1115 1043 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 190 277 - -
HCH10g1115 1043 SUPERFAMILY Protein kinase-like (PK-like) 748 1040 IPR011009 -
HCH10g1115 1043 CDD STKc_IRAK 775 1043 - -
HCH10g1115 1043 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
HCH10g1115 1043 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 295 1041 - -
HCH10g1115 1043 Pfam Leucine Rich Repeat 335 354 IPR001611 GO:0005515(InterPro)
HCH10g1115 1043 Pfam Leucine Rich Repeat 147 167 IPR001611 GO:0005515(InterPro)
HCH10g1115 1043 Pfam Leucine Rich Repeat 244 265 IPR001611 GO:0005515(InterPro)
HCH10g1115 1043 Pfam Leucine Rich Repeat 358 377 IPR001611 GO:0005515(InterPro)
HCH10g1115 1043 Pfam Leucine Rich Repeat 124 144 IPR001611 GO:0005515(InterPro)
HCH10g1115 1043 Pfam Leucine Rich Repeat 196 217 IPR001611 GO:0005515(InterPro)
HCH10g1115 1043 Pfam Leucine Rich Repeat 644 661 IPR001611 GO:0005515(InterPro)
HCH10g1115 1043 SUPERFAMILY RNI-like 88 394 - -
HCH10g1115 1043 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 439 687 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1115 HCH-Chr10:40080534 HCH9g0300 HCH-Chr9:1855074 3.10E-143 dispersed
HCH5g0108 HCH-Chr5:679426 HCH10g1115 HCH-Chr10:40080534 1.60E-06 dispersed
HCH10g1115 HCH-Chr10:40080534 HCH1g0825 HCH-Chr1:56890772 1.30E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81008 PF00069 Pkinase 4.30E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1115 - - - 0.0