Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g1153 | ATGTCTAATCCTGAAACCGACCCACAAACAACAACAACAACAACAACACTGACTGTTAAAAAACCGCCATCAAAAGACCGTCACAGCAAAGTAGATGGCAGAGGAAGACGTATCCGAATGCCCATCATCTGCGCCGCTCGTGTCTTCCAACTCACACGTGAATTAGGCCATAAATCCGACGGTCAGACCATCGAATGGCTCCTCCGTCAAGCCGAGCCTTCCATCATCGCCGCCACCGGCACCGGCACAACCCCAGCAAGTTTCTCAAGCAGTACTATTTCCTCCTCCTCCGCCTCCGCCGCCGCCGCCAACTCCTCTTCTCTTCACCACCACCATCATAATCATAAACCCTTGTTGCCACCGCCTCCTCCTTCACCTCCCACTCCTTTTATCCTTGGTAAGCGTGTACGGACTGATGTTGTCGTCGATGATGATACCACTAACGGTAAAGACGATATTGGTGTTTCTGCTGTTGGTTCTTTCATGGGGCCCACTGCTTCTGGTCATGGGTACTGGGCTATTCCTGCTAGGTCGGATTTCGGTCAAGTTTGGAGCTTTGCTGCCGCCGCCGCCGCGGCGGCCGGTTCTGATATGGTTTCTCAGCAAGCTTCTTTGTTTGTTCATCAGCATCAGCAGCAGTCTATTGGAGAGGCGTCGGCGGCCAAAGTTGGAAATTATCTTCCTGGGCATTTGAATTTGTTGGCTTCTTTATCTGCCGGACAGGGGAGTTCTGGCCGGAGAGATAATGACCACCGTTGA | 759 | 52.17 | MSNPETDPQTTTTTTTLTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSSTISSSSASAAAANSSSLHHHHHNHKPLLPPPPPSPPTPFILGKRVRTDVVVDDDTTNGKDDIGVSAVGSFMGPTASGHGYWAIPARSDFGQVWSFAAAAAAAAGSDMVSQQASLFVHQHQQQSIGEASAAKVGNYLPGHLNLLASLSAGQGSSGRRDNDHR | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 41139047 | 41139805 | - | evm.model.ptg000009l.283 | HCH10g1153 | 553226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g1153 | 252 | MobiDBLite | consensus disorder prediction | 21 | 36 | - | - | |
| HCH10g1153 | 252 | ProSiteProfiles | TCP domain profile. | 24 | 78 | IPR017887 | - | |
| HCH10g1153 | 252 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 20 | 201 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER) | |
| HCH10g1153 | 252 | Pfam | TCP family transcription factor | 24 | 112 | IPR017887 | - | |
| HCH10g1153 | 252 | MobiDBLite | consensus disorder prediction | 100 | 131 | - | - | |
| HCH10g1153 | 252 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| HCH10g1153 | 252 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g1153 | HCH-Chr10:41139047 | HCH8g1306 | HCH-Chr8:48103877 | 1.80E-28 | dispersed | |
| HCH1g0544 | HCH-Chr1:54405412 | HCH10g1153 | HCH-Chr10:41139047 | 1.20E-58 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 32487 | PF03634 | TCP | 9.10E-34 | No_clan | HCH | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g1153 | K16221 | - | csv:101214586 | 261.922 |