Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1161 ATGACTGAGAGAATTGAGAATTACTTGAGAAGAAACTTTGAGCTTGAGCCAAAGAGTCCGTCATCGGAGGCGCTGCAGCGATGGCGATCAGCCGTCTCGATCGTCAAGAATCGACGTCGGAGATTCCGAATGGTTGCCGATCTCGACAAGCGGGCTGAGGCTGAGCAGAAACGTCAGAAACTCCAGGAAAAGATTCGAGTAGCTCTATACGTGCAAAAAGCAGCATTGCATTTCATTGATGCTGGGAAGCGAGGTGAATATAAACTCTCCAAACAAGTGAGTGATGCTGGTTTTGGTATTGAACCAGATGAATTAGCATCCCTTGTTCAATCCCACAATACCAAAAGCTTGGAATATTACGGCGGTATCGAAGGATTAGCACAGCAACTAAACGTCAGTCTGAAAGACGGAATCGTCTCAAGCCAGGTATCTTCAAGGCAGCACACATATGGCGTCAACCGTTACGCTGAGAAGCCTTCAAGAGGGTTTTGGATGTTTGTATGGGAAGCCTTTCATGACTTAACTCTCATCATTCTCTTGGTTTCTTCTGTGATCTCTATAGGCGTTGGAATTGCCACTGAAGGTTGGCCAAAAGGCATGTATGAAGGACTTGGAATAATACTAAGTATCTTCCTTGTCGTCATGGTCACGGCAATTAGCGATTATAATCAATCTTTGCAGTTCAAGGATTTAGACAAGCAGAAGAAAAATATCATTATTCAAGTTGCTAGAGATGGATTCAGACAGAAGCTGTCCATTTATGACTTAGTTGTTGGAGATATTGTCCATTTGTCTATTGGAGATCAAGTTCCTGCTGATGGTGTTCTTATATCGGGACATAGCTTATCGATCGATGAGTCGAGCTTATCGGGCGAAAGTGAGCCTGTAGACGTAGACGAAAACCGGCCTTTTCTTTTAGCAGGGACTAAAGTCCAGGATGGCTCAGGTAAAATGCTAGTTACATCAGTTGGTATGAGAACTGAATGGGGAAGATTAATGGTTACTTTGAGTGAAGGAGGAGAAGACGAAACTCCATTGCAAGTAAAGCTTAACGGCGTCGCAACAATCATTGGAAAGATTGGTTTGGCTTTCGCGGTGTTAACATTTGTAGTTTTGATCTCGAGGTTTATAGCTAATAAAGTGATTCATCATAAGATGGGACACTGGTCCTCCGATGATGCATCAACACTTTTGAATTACTTCGCCATTGCTGTGATCATAATCGTCGTTGCGGTTCCAGAAGGATTGCCTCTAGCAGTGACATTAAGTCTTGCTTTCGCCATGAAAAGGTTGATGAAGGATAAGGCACTTGTGAGACATCTTGCTGCTTGTGAGACAATGGGTTCTGCAAGCTGCATTTGCACTGATAAAACAGGAACATTGACAACAAATCATATGGTAGTTGATAAAATATGGATCTCAGAAGAAACAATAACAATAAAAAACAACAAAAAAGAGATAAAAACATCAGTGAATGAAACAGTTTACAATCTTCTTCTTCAATCAATATTTCAGAACACAAGTTCAGAAGTAGTAAAAGGCAAAGATGGAAGAAACACGATTTTAGGTACTCCAACCGAGACAGCATTACTCGAATTCGGCTTGATTTTAGGAGATGGTTCAATGAGTAATTCATTCAACGATGAGTATAAAATCATCAAAGTAGAACCATTCAATTCAACAAGAAAGAAAATGTCAGTTCTAGTAGCACTTCCCAACAACGGCGGCTTTCGAGCATTCTGCAAAGGAGCATCAGAGATAATATTCTCAATGTGTGATAAAGTTGTTAATTCAAATGGAGAAGGACTGTCTCTTTCAGAGGAGAAAAGAGCAGATATTACTAATGTCATAAATAGCTTTGCTGGAAAAGCTTTGAGAACTCTATGTCTTGCTTATAAGGACATAGAAGAAGAATCTGATGGAATTCCTGAAGATGGTTTTACTTTGATAGCTGTTATTGGGATTAAAGATCCTGTGAGAGATGGAGTGAAGGAAGCTGTTAAGGCTTGTTTGGCAGCTGGAATAACTGTGAGAATGGTAACTGGGGATAATATTAATACAGCTAAAGCTATAGCTAAAGAGTGTGGGATTTTGACAGAAGATGGTTTGGCAATTGAAGGGCCTGAGTTTCGTAATAAGAGTCCTCAAGAACTGGAGAAGTTAATACCAAAACTACAGGTAATGGCAAGGTCATCTCCTCTAGACAAATACAATTTGGTAGTACAGTTAAGGAAAAAATTCAGAGAAGTGGTGGCAGTGACAGGAGATGGTACTAATGATGCTCCTGCATTGCATGAGGCAGACATTGGATTTGCTATGGGTATTGCTGGAACAGAGGTTGCAAAAGAGAATGCAGATGTTGTGATAATGGATGATAACTTCACAACCATAGTGAATGTTGCAAGATGGGGACGTGCAGTGTATATCAACATTCAAAAGTTTGTACAGTTCCAGCTTACAGTCAACGTGGTCGCTCTCATGCTCAATTTTATATCTGCATGCGTTTCAGGTTCTGCTCCCCTAACTGCTGTACAAATGCTGTGGGTGAACTTGATCATGGATACGCTTGGGGCGCTGGCTTTGGCTACGGAGCCACCCAATGAGGGGCTGATGAAAAGAAAGCCAATTGGTAGAAATGTAAATATCATCACTGGGATTATGTGGAGGAATATCATTGGTCAGAGCATCTATCAGATTACTGTTTTGTTAATCCTCACATTTATGGGAAAGCGACTTCTTAAGCTCACTGGTCCGGATTCAACCATCATTCTCAACACCTTTATTTTCAACTCCTTCGTCTTTTGTCAGGTATTCAATGAAATAAACAGCCGTGACATGGAGAAGATAAACATAGTAAGAGGAATGTTTAGCAGCTGGGTTTTCATAACAGTGATAGTCTCCACCGTGGGATTCCAAATCATAATAGTTGAATTTCTGGGAACTTTGGCAGAGACAGTTCCATTAAGCTGGAATTTATGGTTAGGCAGCATTGTAATTGGAGCCATGAGTTTGCCAATAGCTATGCTTCTTAAATGCATCCCTGTTTCCAATTCCAAAACGACATGTCGTTTCCATGATGGTTATCACCCTCTTCCCAATGGTCCAGAATTGGCTTGA 3117 41.0 MTERIENYLRRNFELEPKSPSSEALQRWRSAVSIVKNRRRRFRMVADLDKRAEAEQKRQKLQEKIRVALYVQKAALHFIDAGKRGEYKLSKQVSDAGFGIEPDELASLVQSHNTKSLEYYGGIEGLAQQLNVSLKDGIVSSQVSSRQHTYGVNRYAEKPSRGFWMFVWEAFHDLTLIILLVSSVISIGVGIATEGWPKGMYEGLGIILSIFLVVMVTAISDYNQSLQFKDLDKQKKNIIIQVARDGFRQKLSIYDLVVGDIVHLSIGDQVPADGVLISGHSLSIDESSLSGESEPVDVDENRPFLLAGTKVQDGSGKMLVTSVGMRTEWGRLMVTLSEGGEDETPLQVKLNGVATIIGKIGLAFAVLTFVVLISRFIANKVIHHKMGHWSSDDASTLLNYFAIAVIIIVVAVPEGLPLAVTLSLAFAMKRLMKDKALVRHLAACETMGSASCICTDKTGTLTTNHMVVDKIWISEETITIKNNKKEIKTSVNETVYNLLLQSIFQNTSSEVVKGKDGRNTILGTPTETALLEFGLILGDGSMSNSFNDEYKIIKVEPFNSTRKKMSVLVALPNNGGFRAFCKGASEIIFSMCDKVVNSNGEGLSLSEEKRADITNVINSFAGKALRTLCLAYKDIEEESDGIPEDGFTLIAVIGIKDPVRDGVKEAVKACLAAGITVRMVTGDNINTAKAIAKECGILTEDGLAIEGPEFRNKSPQELEKLIPKLQVMARSSPLDKYNLVVQLRKKFREVVAVTGDGTNDAPALHEADIGFAMGIAGTEVAKENADVVIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALMLNFISACVSGSAPLTAVQMLWVNLIMDTLGALALATEPPNEGLMKRKPIGRNVNIITGIMWRNIIGQSIYQITVLLILTFMGKRLLKLTGPDSTIILNTFIFNSFVFCQVFNEINSRDMEKINIVRGMFSSWVFITVIVSTVGFQIIIVEFLGTLAETVPLSWNLWLGSIVIGAMSLPIAMLLKCIPVSNSKTTCRFHDGYHPLPNGPELA 1038
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 41579940 41592805 + evm.model.ptg000009l.291 HCH10g1161 553234
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1161 1038 PANTHER CATION TRANSPORTING ATPASE 73 1016 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
HCH10g1161 1038 Pfam Cation transport ATPase (P-type) 512 595 - -
HCH10g1161 1038 Pfam E1-E2 ATPase 240 433 - -
HCH10g1161 1038 NCBIfam HAD-IC family P-type ATPase 724 842 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH10g1161 1038 NCBIfam HAD-IC family P-type ATPase 551 699 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH10g1161 1038 NCBIfam HAD-IC family P-type ATPase 206 516 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH10g1161 1038 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 663 IPR023299 GO:0000166(InterPro)
HCH10g1161 1038 Gene3D - 137 337 - -
HCH10g1161 1038 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1016 IPR023298 -
HCH10g1161 1038 PRINTS H+-transporting ATPase (proton pump) signature 613 631 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH10g1161 1038 PRINTS H+-transporting ATPase (proton pump) signature 786 811 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH10g1161 1038 PRINTS H+-transporting ATPase (proton pump) signature 754 770 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH10g1161 1038 Coils Coil 44 64 - -
HCH10g1161 1038 Gene3D - 169 1013 - -
HCH10g1161 1038 Gene3D - 451 799 IPR023214 -
HCH10g1161 1038 FunFam Calcium-transporting ATPase 215 337 - -
HCH10g1161 1038 Pfam haloacid dehalogenase-like hydrolase 638 768 - -
HCH10g1161 1038 Pfam Cation transporting ATPase, C-terminus 839 1012 IPR006068 -
HCH10g1161 1038 FunFam Calcium-transporting ATPase 20 80 - -
HCH10g1161 1038 Pfam Ca2+-ATPase N terminal autoinhibitory domain 10 53 IPR024750 GO:0005516(InterPro)
HCH10g1161 1038 CDD P-type_ATPase_Ca_PMCA-like 143 887 - -
HCH10g1161 1038 Gene3D - 464 658 IPR023299 GO:0000166(InterPro)
HCH10g1161 1038 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
HCH10g1161 1038 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
HCH10g1161 1038 PRINTS P-type cation-transporting ATPase superfamily signature 778 790 - -
HCH10g1161 1038 PRINTS P-type cation-transporting ATPase superfamily signature 754 773 - -
HCH10g1161 1038 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
HCH10g1161 1038 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
HCH10g1161 1038 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 1015 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
HCH10g1161 1038 Gene3D - 20 81 - -
HCH10g1161 1038 Pfam Cation transporter/ATPase, N-terminus 119 186 IPR004014 -
HCH10g1161 1038 FunFam Calcium-transporting ATPase 771 1017 - -
HCH10g1161 1038 SFLD C1.7: P-type atpase like 436 806 - -
HCH10g1161 1038 SMART Cation_ATPase_N_a_2 117 191 IPR004014 -
HCH10g1161 1038 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
HCH10g1161 1038 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
HCH10g1161 1038 SFLD p-type atpase 436 806 IPR044492 -
HCH10g1161 1038 FunFam Calcium-transporting ATPase 651 799 - -
HCH10g1161 1038 FunFam Calcium-transporting ATPase 464 658 - -
HCH10g1161 1038 SUPERFAMILY HAD-like 453 859 IPR036412 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1161 HCH-Chr10:41579940 HCH9g1360 HCH-Chr9:45094899 0.00E+00 dispersed
HCH10g1161 HCH-Chr10:41579940 HCH14g0369 HCH-Chr14:32659956 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1161 K01537 - csv:101203529 1702.18