Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g1161 | ATGACTGAGAGAATTGAGAATTACTTGAGAAGAAACTTTGAGCTTGAGCCAAAGAGTCCGTCATCGGAGGCGCTGCAGCGATGGCGATCAGCCGTCTCGATCGTCAAGAATCGACGTCGGAGATTCCGAATGGTTGCCGATCTCGACAAGCGGGCTGAGGCTGAGCAGAAACGTCAGAAACTCCAGGAAAAGATTCGAGTAGCTCTATACGTGCAAAAAGCAGCATTGCATTTCATTGATGCTGGGAAGCGAGGTGAATATAAACTCTCCAAACAAGTGAGTGATGCTGGTTTTGGTATTGAACCAGATGAATTAGCATCCCTTGTTCAATCCCACAATACCAAAAGCTTGGAATATTACGGCGGTATCGAAGGATTAGCACAGCAACTAAACGTCAGTCTGAAAGACGGAATCGTCTCAAGCCAGGTATCTTCAAGGCAGCACACATATGGCGTCAACCGTTACGCTGAGAAGCCTTCAAGAGGGTTTTGGATGTTTGTATGGGAAGCCTTTCATGACTTAACTCTCATCATTCTCTTGGTTTCTTCTGTGATCTCTATAGGCGTTGGAATTGCCACTGAAGGTTGGCCAAAAGGCATGTATGAAGGACTTGGAATAATACTAAGTATCTTCCTTGTCGTCATGGTCACGGCAATTAGCGATTATAATCAATCTTTGCAGTTCAAGGATTTAGACAAGCAGAAGAAAAATATCATTATTCAAGTTGCTAGAGATGGATTCAGACAGAAGCTGTCCATTTATGACTTAGTTGTTGGAGATATTGTCCATTTGTCTATTGGAGATCAAGTTCCTGCTGATGGTGTTCTTATATCGGGACATAGCTTATCGATCGATGAGTCGAGCTTATCGGGCGAAAGTGAGCCTGTAGACGTAGACGAAAACCGGCCTTTTCTTTTAGCAGGGACTAAAGTCCAGGATGGCTCAGGTAAAATGCTAGTTACATCAGTTGGTATGAGAACTGAATGGGGAAGATTAATGGTTACTTTGAGTGAAGGAGGAGAAGACGAAACTCCATTGCAAGTAAAGCTTAACGGCGTCGCAACAATCATTGGAAAGATTGGTTTGGCTTTCGCGGTGTTAACATTTGTAGTTTTGATCTCGAGGTTTATAGCTAATAAAGTGATTCATCATAAGATGGGACACTGGTCCTCCGATGATGCATCAACACTTTTGAATTACTTCGCCATTGCTGTGATCATAATCGTCGTTGCGGTTCCAGAAGGATTGCCTCTAGCAGTGACATTAAGTCTTGCTTTCGCCATGAAAAGGTTGATGAAGGATAAGGCACTTGTGAGACATCTTGCTGCTTGTGAGACAATGGGTTCTGCAAGCTGCATTTGCACTGATAAAACAGGAACATTGACAACAAATCATATGGTAGTTGATAAAATATGGATCTCAGAAGAAACAATAACAATAAAAAACAACAAAAAAGAGATAAAAACATCAGTGAATGAAACAGTTTACAATCTTCTTCTTCAATCAATATTTCAGAACACAAGTTCAGAAGTAGTAAAAGGCAAAGATGGAAGAAACACGATTTTAGGTACTCCAACCGAGACAGCATTACTCGAATTCGGCTTGATTTTAGGAGATGGTTCAATGAGTAATTCATTCAACGATGAGTATAAAATCATCAAAGTAGAACCATTCAATTCAACAAGAAAGAAAATGTCAGTTCTAGTAGCACTTCCCAACAACGGCGGCTTTCGAGCATTCTGCAAAGGAGCATCAGAGATAATATTCTCAATGTGTGATAAAGTTGTTAATTCAAATGGAGAAGGACTGTCTCTTTCAGAGGAGAAAAGAGCAGATATTACTAATGTCATAAATAGCTTTGCTGGAAAAGCTTTGAGAACTCTATGTCTTGCTTATAAGGACATAGAAGAAGAATCTGATGGAATTCCTGAAGATGGTTTTACTTTGATAGCTGTTATTGGGATTAAAGATCCTGTGAGAGATGGAGTGAAGGAAGCTGTTAAGGCTTGTTTGGCAGCTGGAATAACTGTGAGAATGGTAACTGGGGATAATATTAATACAGCTAAAGCTATAGCTAAAGAGTGTGGGATTTTGACAGAAGATGGTTTGGCAATTGAAGGGCCTGAGTTTCGTAATAAGAGTCCTCAAGAACTGGAGAAGTTAATACCAAAACTACAGGTAATGGCAAGGTCATCTCCTCTAGACAAATACAATTTGGTAGTACAGTTAAGGAAAAAATTCAGAGAAGTGGTGGCAGTGACAGGAGATGGTACTAATGATGCTCCTGCATTGCATGAGGCAGACATTGGATTTGCTATGGGTATTGCTGGAACAGAGGTTGCAAAAGAGAATGCAGATGTTGTGATAATGGATGATAACTTCACAACCATAGTGAATGTTGCAAGATGGGGACGTGCAGTGTATATCAACATTCAAAAGTTTGTACAGTTCCAGCTTACAGTCAACGTGGTCGCTCTCATGCTCAATTTTATATCTGCATGCGTTTCAGGTTCTGCTCCCCTAACTGCTGTACAAATGCTGTGGGTGAACTTGATCATGGATACGCTTGGGGCGCTGGCTTTGGCTACGGAGCCACCCAATGAGGGGCTGATGAAAAGAAAGCCAATTGGTAGAAATGTAAATATCATCACTGGGATTATGTGGAGGAATATCATTGGTCAGAGCATCTATCAGATTACTGTTTTGTTAATCCTCACATTTATGGGAAAGCGACTTCTTAAGCTCACTGGTCCGGATTCAACCATCATTCTCAACACCTTTATTTTCAACTCCTTCGTCTTTTGTCAGGTATTCAATGAAATAAACAGCCGTGACATGGAGAAGATAAACATAGTAAGAGGAATGTTTAGCAGCTGGGTTTTCATAACAGTGATAGTCTCCACCGTGGGATTCCAAATCATAATAGTTGAATTTCTGGGAACTTTGGCAGAGACAGTTCCATTAAGCTGGAATTTATGGTTAGGCAGCATTGTAATTGGAGCCATGAGTTTGCCAATAGCTATGCTTCTTAAATGCATCCCTGTTTCCAATTCCAAAACGACATGTCGTTTCCATGATGGTTATCACCCTCTTCCCAATGGTCCAGAATTGGCTTGA | 3117 | 41.0 | MTERIENYLRRNFELEPKSPSSEALQRWRSAVSIVKNRRRRFRMVADLDKRAEAEQKRQKLQEKIRVALYVQKAALHFIDAGKRGEYKLSKQVSDAGFGIEPDELASLVQSHNTKSLEYYGGIEGLAQQLNVSLKDGIVSSQVSSRQHTYGVNRYAEKPSRGFWMFVWEAFHDLTLIILLVSSVISIGVGIATEGWPKGMYEGLGIILSIFLVVMVTAISDYNQSLQFKDLDKQKKNIIIQVARDGFRQKLSIYDLVVGDIVHLSIGDQVPADGVLISGHSLSIDESSLSGESEPVDVDENRPFLLAGTKVQDGSGKMLVTSVGMRTEWGRLMVTLSEGGEDETPLQVKLNGVATIIGKIGLAFAVLTFVVLISRFIANKVIHHKMGHWSSDDASTLLNYFAIAVIIIVVAVPEGLPLAVTLSLAFAMKRLMKDKALVRHLAACETMGSASCICTDKTGTLTTNHMVVDKIWISEETITIKNNKKEIKTSVNETVYNLLLQSIFQNTSSEVVKGKDGRNTILGTPTETALLEFGLILGDGSMSNSFNDEYKIIKVEPFNSTRKKMSVLVALPNNGGFRAFCKGASEIIFSMCDKVVNSNGEGLSLSEEKRADITNVINSFAGKALRTLCLAYKDIEEESDGIPEDGFTLIAVIGIKDPVRDGVKEAVKACLAAGITVRMVTGDNINTAKAIAKECGILTEDGLAIEGPEFRNKSPQELEKLIPKLQVMARSSPLDKYNLVVQLRKKFREVVAVTGDGTNDAPALHEADIGFAMGIAGTEVAKENADVVIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALMLNFISACVSGSAPLTAVQMLWVNLIMDTLGALALATEPPNEGLMKRKPIGRNVNIITGIMWRNIIGQSIYQITVLLILTFMGKRLLKLTGPDSTIILNTFIFNSFVFCQVFNEINSRDMEKINIVRGMFSSWVFITVIVSTVGFQIIIVEFLGTLAETVPLSWNLWLGSIVIGAMSLPIAMLLKCIPVSNSKTTCRFHDGYHPLPNGPELA | 1038 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 41579940 | 41592805 | + | evm.model.ptg000009l.291 | HCH10g1161 | 553234 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g1161 | 1038 | PANTHER | CATION TRANSPORTING ATPASE | 73 | 1016 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| HCH10g1161 | 1038 | Pfam | Cation transport ATPase (P-type) | 512 | 595 | - | - | |
| HCH10g1161 | 1038 | Pfam | E1-E2 ATPase | 240 | 433 | - | - | |
| HCH10g1161 | 1038 | NCBIfam | HAD-IC family P-type ATPase | 724 | 842 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH10g1161 | 1038 | NCBIfam | HAD-IC family P-type ATPase | 551 | 699 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH10g1161 | 1038 | NCBIfam | HAD-IC family P-type ATPase | 206 | 516 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH10g1161 | 1038 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 460 | 663 | IPR023299 | GO:0000166(InterPro) | |
| HCH10g1161 | 1038 | Gene3D | - | 137 | 337 | - | - | |
| HCH10g1161 | 1038 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 119 | 1016 | IPR023298 | - | |
| HCH10g1161 | 1038 | PRINTS | H+-transporting ATPase (proton pump) signature | 613 | 631 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH10g1161 | 1038 | PRINTS | H+-transporting ATPase (proton pump) signature | 786 | 811 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH10g1161 | 1038 | PRINTS | H+-transporting ATPase (proton pump) signature | 754 | 770 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH10g1161 | 1038 | Coils | Coil | 44 | 64 | - | - | |
| HCH10g1161 | 1038 | Gene3D | - | 169 | 1013 | - | - | |
| HCH10g1161 | 1038 | Gene3D | - | 451 | 799 | IPR023214 | - | |
| HCH10g1161 | 1038 | FunFam | Calcium-transporting ATPase | 215 | 337 | - | - | |
| HCH10g1161 | 1038 | Pfam | haloacid dehalogenase-like hydrolase | 638 | 768 | - | - | |
| HCH10g1161 | 1038 | Pfam | Cation transporting ATPase, C-terminus | 839 | 1012 | IPR006068 | - | |
| HCH10g1161 | 1038 | FunFam | Calcium-transporting ATPase | 20 | 80 | - | - | |
| HCH10g1161 | 1038 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 10 | 53 | IPR024750 | GO:0005516(InterPro) | |
| HCH10g1161 | 1038 | CDD | P-type_ATPase_Ca_PMCA-like | 143 | 887 | - | - | |
| HCH10g1161 | 1038 | Gene3D | - | 464 | 658 | IPR023299 | GO:0000166(InterPro) | |
| HCH10g1161 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 673 | 683 | - | - | |
| HCH10g1161 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 454 | 468 | - | - | |
| HCH10g1161 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 778 | 790 | - | - | |
| HCH10g1161 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 754 | 773 | - | - | |
| HCH10g1161 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 285 | 299 | - | - | |
| HCH10g1161 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 651 | 662 | - | - | |
| HCH10g1161 | 1038 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 111 | 1015 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| HCH10g1161 | 1038 | Gene3D | - | 20 | 81 | - | - | |
| HCH10g1161 | 1038 | Pfam | Cation transporter/ATPase, N-terminus | 119 | 186 | IPR004014 | - | |
| HCH10g1161 | 1038 | FunFam | Calcium-transporting ATPase | 771 | 1017 | - | - | |
| HCH10g1161 | 1038 | SFLD | C1.7: P-type atpase like | 436 | 806 | - | - | |
| HCH10g1161 | 1038 | SMART | Cation_ATPase_N_a_2 | 117 | 191 | IPR004014 | - | |
| HCH10g1161 | 1038 | SUPERFAMILY | Calcium ATPase, transduction domain A | 239 | 333 | IPR008250 | - | |
| HCH10g1161 | 1038 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 456 | 462 | IPR018303 | - | |
| HCH10g1161 | 1038 | SFLD | p-type atpase | 436 | 806 | IPR044492 | - | |
| HCH10g1161 | 1038 | FunFam | Calcium-transporting ATPase | 651 | 799 | - | - | |
| HCH10g1161 | 1038 | FunFam | Calcium-transporting ATPase | 464 | 658 | - | - | |
| HCH10g1161 | 1038 | SUPERFAMILY | HAD-like | 453 | 859 | IPR036412 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g1161 | HCH-Chr10:41579940 | HCH9g1360 | HCH-Chr9:45094899 | 0.00E+00 | dispersed | |
| HCH10g1161 | HCH-Chr10:41579940 | HCH14g0369 | HCH-Chr14:32659956 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g1161 | K01537 | - | csv:101203529 | 1702.18 |