Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1188 ATGATGGAGATGTCAACCCAGCCACCAAATTCTGATCCAAATCCTGTTTCAGATGTGCAGGGCTCTTGTCTCTATGATCTATTGTGTTCAGATTCAGAAGCTCAGGGCTGGTGGAAAAAGGATCAACTGGAGGATTTAGAAACTCAAGGATGGAACTTGAAAAGGGATCAAGAGGAGGATTCAGAAACACAAGGCTGGAACTGGAAAAAGGATCAACAGGCCTCTGGTGCCCAGAAAAGGCTGGAGGATCTGTTGCATCAGTCTGGCAATAAATTCTGTGCAGATTGTGGATCACCAGATCCAAAATGGGTATCAATGAATTTGGGAGTGTTTATTTGCATAAAATGTTCTGGAGTACACAGAAGTCTTGGAGTACATATATCTAAGGTTTTTTCAGTGAAACTAGATAATTGGACTGATGAACAAGTAAATACCTTAGTAAGTATGGGTGGAAACACAGATGCAAACAAGAAGTATGAAGCTTGCATTGTAGATGGCATCATAAAACCAAAACCAGATTCCTCTATAGAGGAGCGTCTTGATTTTATAAGGAAAAAGTATGAGCTGTTACAATTTTTGAACCTTGACGATCAAAATTCTTGCTGTCATACTTCATCTCATAAAAGGAGTTCATCAGGCTCTCAAAATAACTCTTCAAGCAAGAATTGTGCCCACGATAAAAAGCACTTTGAGAAACAAGCAACTAGGCATCGCATTGGGCATGCATTTCGCAACAGCTGGGGAAGAAGAGACTGTGACCATAAGAATTTGGAGAAGATCAACCCCTTGAAGAGAAACACATCGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTCAATGTGGTCAGAGGCACAAACCTTGCTATCCGGGATGTGATGACCAGTGACCCTTATGTAATTCTCACGTTAGGTCAACAATCAGTGAAGACTCGTGTCATAAAAAGCAACCTTAACCCGGTTTGGAATGAGAGCCTGATGCTGTCGATTCCCGAGCATATTCCTCCCCTAAAAGTGCTTGTGTACGATAAGGATACATTTTCCACCGACGATTTTATGGGTGAGGCTGAAATCGATATTCAGCCGTTGGTCACGGCCACGAAGGCCTACGAGAAGTCCACAATTAACGAATCAATGCAGCTGGGGAAGTGGGTAGCAAGCAATGACAATACCTTGGTAAAAGATGGAATCATTAACCTTGTAGATGGTAAAGTCAGACAGGACATCTCTCTTAGACTGCAGAATGTTGAGAGGGGTGTCCTAGAAATTGAGCTAGAATGCATTCCTCTCACACAATAG 1299 42.19 MMEMSTQPPNSDPNPVSDVQGSCLYDLLCSDSEAQGWWKKDQLEDLETQGWNLKRDQEEDSETQGWNWKKDQQASGAQKRLEDLLHQSGNKFCADCGSPDPKWVSMNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTLVSMGGNTDANKKYEACIVDGIIKPKPDSSIEERLDFIRKKYELLQFLNLDDQNSCCHTSSHKRSSSGSQNNSSSKNCAHDKKHFEKQATRHRIGHAFRNSWGRRDCDHKNLEKINPLKRNTSAGMVEFVGLIKVNVVRGTNLAIRDVMTSDPYVILTLGQQSVKTRVIKSNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVTATKAYEKSTINESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGVLEIELECIPLTQ 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42353502 42363481 + evm.model.ptg000009l.318 HCH10g1188 553261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1188 432 SUPERFAMILY ArfGap/RecO-like zinc finger 78 193 IPR037278 -
HCH10g1188 432 MobiDBLite consensus disorder prediction 204 235 - -
HCH10g1188 432 SMART arf_gap_3 78 201 IPR001164 GO:0005096(InterPro)
HCH10g1188 432 PRINTS HIV Rev interacting protein signature 109 126 IPR001164 GO:0005096(InterPro)
HCH10g1188 432 PRINTS HIV Rev interacting protein signature 130 151 IPR001164 GO:0005096(InterPro)
HCH10g1188 432 PRINTS HIV Rev interacting protein signature 90 109 IPR001164 GO:0005096(InterPro)
HCH10g1188 432 ProSiteProfiles ARF GTPase-activating proteins domain profile. 78 200 IPR001164 GO:0005096(InterPro)
HCH10g1188 432 SMART C2_3c 277 372 IPR000008 -
HCH10g1188 432 MobiDBLite consensus disorder prediction 204 221 - -
HCH10g1188 432 FunFam stromal membrane-associated protein 1 isoform X1 62 199 - -
HCH10g1188 432 Gene3D Arf GTPase activating protein 57 201 IPR038508 -
HCH10g1188 432 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 274 432 - -
HCH10g1188 432 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 68 432 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
HCH10g1188 432 Pfam C2 domain 277 365 IPR000008 -
HCH10g1188 432 CDD C2_ArfGAP 275 419 - -
HCH10g1188 432 Gene3D C2 domain 275 430 IPR035892 -
HCH10g1188 432 Pfam Putative GTPase activating protein for Arf 79 192 IPR001164 GO:0005096(InterPro)
HCH10g1188 432 CDD ArfGap 81 187 - -
HCH10g1188 432 ProSiteProfiles C2 domain profile. 259 374 IPR000008 -
HCH10g1188 432 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 273 368 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1188 HCH-Chr10:42353502 HCH14g1126 HCH-Chr14:38170846 1.10E-94 dispersed
HCH5g1161 HCH-Chr5:38830267 HCH10g1188 HCH-Chr10:42353502 4.20E-18 transposed
HCH1g0635 HCH-Chr1:55338808 HCH10g1188 HCH-Chr10:42353502 1.70E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1188 K12486 - csv:101215531 633.639