Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g1194 | ATGGGTGTGGCAATGGAAACCCAATTCCATGTTCTTGCTGTTGATGACAGTTTCATTGATAGAAAGTTGATCGAGAGACTCCTTCAGACTTCCTCTTATCATGTTACTGCTGTTGATTCTGGAAGTAAAGCTTTGGAAATTTTGGGTCTTATTGAAGATGATGACAGAGATTCAAATATCCCTTCAATTTCACCCAATAATCATCAAGAAGTGGAAGTGAATTTGATAATTACAGATTACAGTATGCCAGGAATGACTGGTTATGATCTCCTTAGAAAGATCAAGGAATCAAAATCTCTTAAAGACATACCAGTTTTCATCATGTCCTCAGAGAATGTTCCATCAAGAATCAATAGATGTTTGGAAGAAGGAGCAGAGGAGTTTTTTCTTAAACCAGTTCAATTATCTGATGTCAGCAAGCTTAGACCCCATTTGACAAAAGAAAGAGTCGGAAGGAATTGA | 462 | 37.01 | MGVAMETQFHVLAVDDSFIDRKLIERLLQTSSYHVTAVDSGSKALEILGLIEDDDRDSNIPSISPNNHQEVEVNLIITDYSMPGMTGYDLLRKIKESKSLKDIPVFIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVSKLRPHLTKERVGRN | 153 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 42716281 | 42717189 | - | evm.model.ptg000009l.324 | HCH10g1194 | 553267 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g1194 | 153 | CDD | REC_typeA_ARR | 11 | 141 | - | - | |
| HCH10g1194 | 153 | Gene3D | - | 10 | 153 | - | - | |
| HCH10g1194 | 153 | ProSiteProfiles | Response regulatory domain profile. | 10 | 146 | IPR001789 | GO:0000160(InterPro) | |
| HCH10g1194 | 153 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 7 | 148 | IPR045279 | GO:0009736(InterPro) | |
| HCH10g1194 | 153 | SMART | REC_2 | 9 | 142 | IPR001789 | GO:0000160(InterPro) | |
| HCH10g1194 | 153 | SUPERFAMILY | CheY-like | 8 | 138 | IPR011006 | - | |
| HCH10g1194 | 153 | Pfam | Response regulator receiver domain | 68 | 138 | IPR001789 | GO:0000160(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g1194 | HCH-Chr10:42716281 | HCH13g0137 | HCH-Chr13:879166 | 2.20E-45 | dispersed | |
| HCH9g1007 | HCH-Chr9:8043156 | HCH10g1194 | HCH-Chr10:42716281 | 1.20E-56 | transposed | |
| HCH1g0631 | HCH-Chr1:55319399 | HCH10g1194 | HCH-Chr10:42716281 | 8.60E-62 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 32490 | PF00072 | Response_reg | 3.80E-20 | CL0304 | HCH | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g1194 | K14492 | - | mtr:25499969 | 238.81 |