Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1202 ATGAATGAAAAGGATGAATTTGAACTCAGTAATAGGGCTGATGATCCTATGAACTATTCAGCCAGTATTTCCTCAGGCTGGCAATTTACTGGTGCTAATCTTACAAATGAGTCTATTGGATTCATTTCAACAGGGAATCCTTCTATAGATGGAAATGGGGATCTAGGTGTATCGTCTTGTCCTTCAACTTCAAGGGCTAACTCATTTAGTCCAAATCTTTGGGACCACCCGCCAACCAATACGCAAAACTCAGGGTTCTGCAATTTCATTGTCCAAAACAATATCGGTGGCTCTAATACGACTGCGATTGACAAAGGGGGTCGGAACTCTTTGAGATCTAGTATAGATATGGATTGGAACCAGCAAAATCCATGGATGAAAGGGGTTTTCTCTGCAAATATTCCTGCCATGCTTCCAGCAAGTCTGTCTCAACTTCCAGCTGATTCTGCTTTCATAGAGCGTGCAGCAAGATTCTCTTGTTTCAATAATGGAAATTTTGGGGATATGACCAGTGCTTTTGGTATTCCTGAATCAATGGGCATTCATTCTAGGGATGCTGTTACAATGCTTGGAAGGCAAGAAGTTATTACCAGAAATGAAGCCTCCAAAGATGTTTCTTTGTGTATGGAGCTTGAGGCTCCAGAAAAAAGCACTCTTAAGAATGATAGAGGAAGTGAGTGGCCTCAAGATAGAGCAGACCAAGGTGACCCTGCTGAGTCTGGTAATGAATCTGATGAAGCGGGGTTTAGTGGTGGTGGTGATGGTCAAGATGAGGGTAAATTGGAAGGTACTGTTGGGGAGCCATCTACTGGAGGACTCGTCTTCAAGAAAAGGAAAAGGGGTGGGCAGAATAAGGAACTTGGACAATCCAAAGAAGCTCCGCAGCCAACTGGTGAAACTGCTAAAAATGGAGCATTAAATCAACGGAAGGGAGACCAGAACCCAAATGCTACAACGAACAAGCCTGCAGGAAAGCAAGGAAAACAAGATTCTCAAGCTTCAGATCCCAAACAAGAATATATTCATGTTAGAGCTCGAAGAGGCCAGGCAACAAACAGCCATAGTCTTGCAGAAAGGGTAAGAAGAGAGAAGATAAGTGAAAGAATGAGGCTCCTTCAAGACCTTGTGCCTGGGTGCAGTAAGGTCACCGGCAAAGCAGTGATGCTTGATGAAATTATTAACTATGTACAGTCACTGCAACGGCAAGTTGAGTTTTTGTCAATGAAGCTTGCAACAGTTAATCCGCGACTAGATTTTAACATTGAAGGGCTTCTTGCAAAAGATATCATTCAATCAAGGACCGGTCCATCCTCATTTGGTTTTTCTCCCGAGTTATCAATGCCTTATCTTCCACAACATCCATCTCACCATGGATTCATTCCACCTAGTCTTCCTAACATGGGTAACTCTTTGGACCTACTGCGGAGAACAATTAATTCCCAGTTGACATCATTGGCTGGTGGTGGTTTCAAGGAACCTATTCAGTTACCCAATGTGTGGGAGGATGAATTCCACAATGTTATTCAAATGAACGTTGATACCACTGCTCCTTCCAATAGCCAAGATGTTGACGGTTCTATTCCACAAGAATGCAACATGAAAGCTGAAGTCTGA 1614 43.0 MNEKDEFELSNRADDPMNYSASISSGWQFTGANLTNESIGFISTGNPSIDGNGDLGVSSCPSTSRANSFSPNLWDHPPTNTQNSGFCNFIVQNNIGGSNTTAIDKGGRNSLRSSIDMDWNQQNPWMKGVFSANIPAMLPASLSQLPADSAFIERAARFSCFNNGNFGDMTSAFGIPESMGIHSRDAVTMLGRQEVITRNEASKDVSLCMELEAPEKSTLKNDRGSEWPQDRADQGDPAESGNESDEAGFSGGGDGQDEGKLEGTVGEPSTGGLVFKKRKRGGQNKELGQSKEAPQPTGETAKNGALNQRKGDQNPNATTNKPAGKQGKQDSQASDPKQEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDIIQSRTGPSSFGFSPELSMPYLPQHPSHHGFIPPSLPNMGNSLDLLRRTINSQLTSLAGGGFKEPIQLPNVWEDEFHNVIQMNVDTTAPSNSQDVDGSIPQECNMKAEV 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42953550 42956174 - evm.model.ptg000009l.332 HCH10g1202 553275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1202 537 MobiDBLite consensus disorder prediction 215 238 - -
HCH10g1202 537 MobiDBLite consensus disorder prediction 213 337 - -
HCH10g1202 537 SMART finulus 355 405 IPR011598 GO:0046983(InterPro)
HCH10g1202 537 CDD bHLH_AtBPE_like 339 424 - -
HCH10g1202 537 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 399 IPR011598 GO:0046983(InterPro)
HCH10g1202 537 MobiDBLite consensus disorder prediction 288 334 - -
HCH10g1202 537 Pfam Helix-loop-helix DNA-binding domain 352 400 IPR011598 GO:0046983(InterPro)
HCH10g1202 537 Gene3D - 346 419 IPR036638 GO:0046983(InterPro)
HCH10g1202 537 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 418 IPR036638 GO:0046983(InterPro)
HCH10g1202 537 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 142 453 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
HCH10g1202 537 FunFam Basic helix-loop-helix transcription factor 346 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1202 HCH-Chr10:42953550 HCH12g0533 HCH-Chr12:3131179 6.00E-50 dispersed
HCH5g1042 HCH-Chr5:12081685 HCH10g1202 HCH-Chr10:42953550 3.40E-41 transposed
HCH8g1341 HCH-Chr8:48313935 HCH10g1202 HCH-Chr10:42953550 9.40E-34 transposed
HCH1g0847 HCH-Chr1:57085334 HCH10g1202 HCH-Chr10:42953550 1.90E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32491 PF00010 HLH 6.60E-06 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1202 - - - 0.0