Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1211 ATGGAAATTGGAAGAGGGAATGGATTTTTGCTCTCTTTGGCTTTGATTTGGATATGGACTTTTGCAACAAATACTTCTCTTGCTATCAAAACTCCAAATTTTGAAGTTCAAGCTTTGATGGGAATTAAAGCTGCTCTAAAGGATCCTCATTCAGTTCTTAACTATTGGGATGAAGATTCTATGGATCCATGCACTTGGAATTTGATCACTTGCTCCCCTGATAAACATGTCATTGGCATAGAAGCTGCAAACCAAAGCTTTTCTGGTTCACTGTCACCAAGTATTGGGAATTTGACAAATCTCCAATTTGTGCGGCTTCAGGATAATAATATATCAGGAAGAATTCCTTATGAGATTAGCAAGATCCCAAAACTTCACACACTTGATCTTTCAAACAACGTCTTATCTGGTGAAATTCCCAGTTCTTTCTCCAATTTGAAAAGCGTACAATACATGAGACTTAACAATAACAGCCTTTCTGGAGCAATTCCTCCATCACTGGCTAACATGACCCAGCTTGCCTTATTGGACCTTTCCTATAATAATTTGAGTGGTCACGTACCTACATTGCTGGCTAAGACATTCAATTTTACTGGGAATTCTTGGATTTGTGCTCCTGGAACCAAGCAAGTGTGCTATGGAGTAACTCCAATGCCACTATCTTCTACTATCAATACTTCTCCATACTCTCAATTACAACCTCCTGGGAGACCAAAAGGCCAGAAAATTGCCTTAGCCATTGGCTCTAGCTTGGGCTGCATCTTTCTGATAACTCTTGGGTTTGGTTTCTTTCTCTGGTGGAAGCACAGGCACAATAAACAGATATACTTTGAAGCTAATGATCGGTATCACGAACAACTCAGCCTCGGAAACCTGAAGATGTTTCAGTTCAGAGAACTTCAGAACGCCACACAAAACTTCAGCAGTAAAAACTTGATAGGAAAAGGTGGTTTTGGAAATGTATACAAAGGTCATCTCCAAGATGGAACCATTGTAGCTGTCAAGAGACTCAAAGATGGAAATGTCATGCGAGGAGATATCCAGTTTCAGACTGAAGTTGAGATGATCAGCTTGGCAGTGCATAGGAACCTCCTCAGGTTGTGTGGTTTCTGTATGACAGCAACTGAGAGGCTCTTGGTTTATCCATATATGTCCAATGGCAGTGTCGCTTCCCGTCTTAAAGCCAAACCTGCACTCGATTGGAGTACGAGGAAGAGAATAGCCTTGGGAGCTGCTAGGGGCTTACTATACTTACACGAACAGTGTGATCCGAAAATAATTCACAGGGATGTGAAGGCTGCAAATATACTGCTTGATGACTTCTGTGAGGCAGTGGTGGGGGATTTTGGGTTGGCAAAGCTGTTAGATCACAGAGATACCCATGTCACCACTGCTGTAAGGGGAACTGTAGGGCACATTGCGCCAGAGTATCTGTCAACTGGCCAATCCTCTGAGAAAACGGATGTTTACGGATTCGGAATTCTACTTTTAGAGCTGATATCTGGCCAAAGAGCTCTTGAATTTGGAAAATCAGCAAACAAAAAAGGAGCAATGCTAGACTGGGTAAAGAAGATTCACCAAGAAAAGAAGCTTGAAATGCTTGTTGACAAGGACTTGAAAAGCGATTACGACCGAATTGAGCTTGACGAAATGGTTCAAGTAGCTCTCCTGTGCACCCAGTATCTACCAAGCCACAGGCCGAAGACGTCTGAAGTGGTCAGGATGCTTGAAGGAGATGGACTTGCGGAGAAATGGGAAGCTTCCCAGAGAGCAGATACAAGCAGGGGCAGAGCCAATGAGTTCTCCTCTTCAGAACGTCATTTTGATCTCACTAATGACTCTTCATTGCTTGCTCAAGCACTAGAGCTTTCAGGACCAAGATAA 1884 42.73 MEIGRGNGFLLSLALIWIWTFATNTSLAIKTPNFEVQALMGIKAALKDPHSVLNYWDEDSMDPCTWNLITCSPDKHVIGIEAANQSFSGSLSPSIGNLTNLQFVRLQDNNISGRIPYEISKIPKLHTLDLSNNVLSGEIPSSFSNLKSVQYMRLNNNSLSGAIPPSLANMTQLALLDLSYNNLSGHVPTLLAKTFNFTGNSWICAPGTKQVCYGVTPMPLSSTINTSPYSQLQPPGRPKGQKIALAIGSSLGCIFLITLGFGFFLWWKHRHNKQIYFEANDRYHEQLSLGNLKMFQFRELQNATQNFSSKNLIGKGGFGNVYKGHLQDGTIVAVKRLKDGNVMRGDIQFQTEVEMISLAVHRNLLRLCGFCMTATERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHRDTHVTTAVRGTVGHIAPEYLSTGQSSEKTDVYGFGILLLELISGQRALEFGKSANKKGAMLDWVKKIHQEKKLEMLVDKDLKSDYDRIELDEMVQVALLCTQYLPSHRPKTSEVVRMLEGDGLAEKWEASQRADTSRGRANEFSSSERHFDLTNDSSLLAQALELSGPR 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43136147 43140392 - evm.model.ptg000009l.341 HCH10g1211 553284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1211 627 FunFam Somatic embryogenesis receptor kinase 1 31 214 - -
HCH10g1211 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g1211 627 Gene3D Phosphorylase Kinase; domain 1 276 383 - -
HCH10g1211 627 Pfam Leucine Rich Repeat 100 121 IPR001611 GO:0005515(InterPro)
HCH10g1211 627 FunFam Somatic embryogenesis receptor-like kinase 1 384 596 - -
HCH10g1211 627 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
HCH10g1211 627 SUPERFAMILY Protein kinase-like (PK-like) 285 577 IPR011009 -
HCH10g1211 627 FunFam Somatic embryogenesis receptor kinase 1 276 383 - -
HCH10g1211 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 19 627 - -
HCH10g1211 627 ProSiteProfiles Protein kinase domain profile. 307 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g1211 627 Gene3D Ribonuclease Inhibitor 32 214 IPR032675 -
HCH10g1211 627 SUPERFAMILY L domain-like 34 197 - -
HCH10g1211 627 Gene3D Transferase(Phosphotransferase) domain 1 384 596 - -
HCH10g1211 627 SMART serkin_6 307 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g1211 627 MobiDBLite consensus disorder prediction 587 606 - -
HCH10g1211 627 Pfam Leucine rich repeat 123 183 IPR001611 GO:0005515(InterPro)
HCH10g1211 627 Pfam Protein tyrosine and serine/threonine kinase 310 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g1211 627 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1211 HCH-Chr10:43136147 HCH13g0647 HCH-Chr13:5064122 3.60E-216 dispersed
HCH1g0837 HCH-Chr1:56965396 HCH10g1211 HCH-Chr10:43136147 7.80E-235 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81010 PF00069 Pkinase 2.50E-43 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1211 - - - 0.0