Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g1211 | ATGGAAATTGGAAGAGGGAATGGATTTTTGCTCTCTTTGGCTTTGATTTGGATATGGACTTTTGCAACAAATACTTCTCTTGCTATCAAAACTCCAAATTTTGAAGTTCAAGCTTTGATGGGAATTAAAGCTGCTCTAAAGGATCCTCATTCAGTTCTTAACTATTGGGATGAAGATTCTATGGATCCATGCACTTGGAATTTGATCACTTGCTCCCCTGATAAACATGTCATTGGCATAGAAGCTGCAAACCAAAGCTTTTCTGGTTCACTGTCACCAAGTATTGGGAATTTGACAAATCTCCAATTTGTGCGGCTTCAGGATAATAATATATCAGGAAGAATTCCTTATGAGATTAGCAAGATCCCAAAACTTCACACACTTGATCTTTCAAACAACGTCTTATCTGGTGAAATTCCCAGTTCTTTCTCCAATTTGAAAAGCGTACAATACATGAGACTTAACAATAACAGCCTTTCTGGAGCAATTCCTCCATCACTGGCTAACATGACCCAGCTTGCCTTATTGGACCTTTCCTATAATAATTTGAGTGGTCACGTACCTACATTGCTGGCTAAGACATTCAATTTTACTGGGAATTCTTGGATTTGTGCTCCTGGAACCAAGCAAGTGTGCTATGGAGTAACTCCAATGCCACTATCTTCTACTATCAATACTTCTCCATACTCTCAATTACAACCTCCTGGGAGACCAAAAGGCCAGAAAATTGCCTTAGCCATTGGCTCTAGCTTGGGCTGCATCTTTCTGATAACTCTTGGGTTTGGTTTCTTTCTCTGGTGGAAGCACAGGCACAATAAACAGATATACTTTGAAGCTAATGATCGGTATCACGAACAACTCAGCCTCGGAAACCTGAAGATGTTTCAGTTCAGAGAACTTCAGAACGCCACACAAAACTTCAGCAGTAAAAACTTGATAGGAAAAGGTGGTTTTGGAAATGTATACAAAGGTCATCTCCAAGATGGAACCATTGTAGCTGTCAAGAGACTCAAAGATGGAAATGTCATGCGAGGAGATATCCAGTTTCAGACTGAAGTTGAGATGATCAGCTTGGCAGTGCATAGGAACCTCCTCAGGTTGTGTGGTTTCTGTATGACAGCAACTGAGAGGCTCTTGGTTTATCCATATATGTCCAATGGCAGTGTCGCTTCCCGTCTTAAAGCCAAACCTGCACTCGATTGGAGTACGAGGAAGAGAATAGCCTTGGGAGCTGCTAGGGGCTTACTATACTTACACGAACAGTGTGATCCGAAAATAATTCACAGGGATGTGAAGGCTGCAAATATACTGCTTGATGACTTCTGTGAGGCAGTGGTGGGGGATTTTGGGTTGGCAAAGCTGTTAGATCACAGAGATACCCATGTCACCACTGCTGTAAGGGGAACTGTAGGGCACATTGCGCCAGAGTATCTGTCAACTGGCCAATCCTCTGAGAAAACGGATGTTTACGGATTCGGAATTCTACTTTTAGAGCTGATATCTGGCCAAAGAGCTCTTGAATTTGGAAAATCAGCAAACAAAAAAGGAGCAATGCTAGACTGGGTAAAGAAGATTCACCAAGAAAAGAAGCTTGAAATGCTTGTTGACAAGGACTTGAAAAGCGATTACGACCGAATTGAGCTTGACGAAATGGTTCAAGTAGCTCTCCTGTGCACCCAGTATCTACCAAGCCACAGGCCGAAGACGTCTGAAGTGGTCAGGATGCTTGAAGGAGATGGACTTGCGGAGAAATGGGAAGCTTCCCAGAGAGCAGATACAAGCAGGGGCAGAGCCAATGAGTTCTCCTCTTCAGAACGTCATTTTGATCTCACTAATGACTCTTCATTGCTTGCTCAAGCACTAGAGCTTTCAGGACCAAGATAA | 1884 | 42.73 | MEIGRGNGFLLSLALIWIWTFATNTSLAIKTPNFEVQALMGIKAALKDPHSVLNYWDEDSMDPCTWNLITCSPDKHVIGIEAANQSFSGSLSPSIGNLTNLQFVRLQDNNISGRIPYEISKIPKLHTLDLSNNVLSGEIPSSFSNLKSVQYMRLNNNSLSGAIPPSLANMTQLALLDLSYNNLSGHVPTLLAKTFNFTGNSWICAPGTKQVCYGVTPMPLSSTINTSPYSQLQPPGRPKGQKIALAIGSSLGCIFLITLGFGFFLWWKHRHNKQIYFEANDRYHEQLSLGNLKMFQFRELQNATQNFSSKNLIGKGGFGNVYKGHLQDGTIVAVKRLKDGNVMRGDIQFQTEVEMISLAVHRNLLRLCGFCMTATERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHRDTHVTTAVRGTVGHIAPEYLSTGQSSEKTDVYGFGILLLELISGQRALEFGKSANKKGAMLDWVKKIHQEKKLEMLVDKDLKSDYDRIELDEMVQVALLCTQYLPSHRPKTSEVVRMLEGDGLAEKWEASQRADTSRGRANEFSSSERHFDLTNDSSLLAQALELSGPR | 627 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 43136147 | 43140392 | - | evm.model.ptg000009l.341 | HCH10g1211 | 553284 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g1211 | 627 | FunFam | Somatic embryogenesis receptor kinase 1 | 31 | 214 | - | - | |
HCH10g1211 | 627 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 426 | 438 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH10g1211 | 627 | Gene3D | Phosphorylase Kinase; domain 1 | 276 | 383 | - | - | |
HCH10g1211 | 627 | Pfam | Leucine Rich Repeat | 100 | 121 | IPR001611 | GO:0005515(InterPro) | |
HCH10g1211 | 627 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 384 | 596 | - | - | |
HCH10g1211 | 627 | Pfam | Leucine rich repeat N-terminal domain | 33 | 72 | IPR013210 | - | |
HCH10g1211 | 627 | SUPERFAMILY | Protein kinase-like (PK-like) | 285 | 577 | IPR011009 | - | |
HCH10g1211 | 627 | FunFam | Somatic embryogenesis receptor kinase 1 | 276 | 383 | - | - | |
HCH10g1211 | 627 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 19 | 627 | - | - | |
HCH10g1211 | 627 | ProSiteProfiles | Protein kinase domain profile. | 307 | 562 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH10g1211 | 627 | Gene3D | Ribonuclease Inhibitor | 32 | 214 | IPR032675 | - | |
HCH10g1211 | 627 | SUPERFAMILY | L domain-like | 34 | 197 | - | - | |
HCH10g1211 | 627 | Gene3D | Transferase(Phosphotransferase) domain 1 | 384 | 596 | - | - | |
HCH10g1211 | 627 | SMART | serkin_6 | 307 | 576 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH10g1211 | 627 | MobiDBLite | consensus disorder prediction | 587 | 606 | - | - | |
HCH10g1211 | 627 | Pfam | Leucine rich repeat | 123 | 183 | IPR001611 | GO:0005515(InterPro) | |
HCH10g1211 | 627 | Pfam | Protein tyrosine and serine/threonine kinase | 310 | 576 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH10g1211 | 627 | ProSitePatterns | Protein kinases ATP-binding region signature. | 313 | 335 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g1211 | HCH-Chr10:43136147 | HCH13g0647 | HCH-Chr13:5064122 | 3.60E-216 | dispersed | |
HCH1g0837 | HCH-Chr1:56965396 | HCH10g1211 | HCH-Chr10:43136147 | 7.80E-235 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81010 | PF00069 | Pkinase | 2.50E-43 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g1211 | - | - | - | 0.0 |