Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1216 ATGGCTTTTCATGCAAATTCCTTCACTTTCTTTCTTCTTATTATTCTAATTTTCTCATTTTTCATTCCTTCACTTTCCATTAATAATAATAATAATAACTCCCAATGCCAACTTCAGGTAATGACCCAAGGCTGCCATGACAAAGCCAATTCCTTAACCCTAAAACTCATTGCCATTGCTTCCATATTAGTGTTTAGCATAATTGGTGTTTGTCTTCCCATATTCTCACACGTCGCGCCGTCTCTTCAACCGGACCGCAACCCTTTCGCCGTCATTAAAGCTTTCTCTTCCGGTGTCATTCTTGCAACTGGCTTCATGCATGTTTTGCCTGATTCCTTTGATTGCTTGACTTCTCCTTGTTTGCCTCATAATCCATGGAGGAAATTCCCTTTTACGACATTCGTAGCGATGCTTTCGGCATTGTTCACTTTAATGGTGGATTCGTTTTCGATGAGTTATTATGGTAAACACATGACTGTTGTTGATGATCAAGAGAAACAAGAAGATGAAGGAAACCCTAATCTTGAAAAAGAAGGAATTGATTTGAATGAGAAGAAAGGTTCCGAGTTGATACGACATCGCGTCGTAGCTCAAGTATTGGAAGGAGGAATAGTGGTTCATTCAGTGGTGATAGGTTTATCAATGGGAGCTTCAAAGAATCCATGCACCATTAAACCTCTCATTGCTGCTCTTTGTTTTCATCAGCTTTTTGAAGGAATGGGTCTTGGAGGGTGTATATTACAGGGTGAATATGGAATGAAGATAAAAGGAGTGATGGTATTATTCTTCTCGATCACAACCCCAATTGGAATAGGATTAGGAATTGGTTTGTCAAATCTTTACAATGAAAAGAGTCCAACTGCTCTCATTGTTGTTGGAATTCTAAATGCTTCTTCTGCTGGTTTACTCATTTATATGTCTTTGGTTGAATTATTAGCTTCTGATTTCATGTCCCCTAAATTGCAACAAAATCTCAACCTTCAATTCTTCTGTTATCTGGCTGTTCTTTTGGGTGCTGGAGCCATGTCTTTGATGGCCAAATGGGCTTGA 1050 38.95 MAFHANSFTFFLLIILIFSFFIPSLSINNNNNNSQCQLQVMTQGCHDKANSLTLKLIAIASILVFSIIGVCLPIFSHVAPSLQPDRNPFAVIKAFSSGVILATGFMHVLPDSFDCLTSPCLPHNPWRKFPFTTFVAMLSALFTLMVDSFSMSYYGKHMTVVDDQEKQEDEGNPNLEKEGIDLNEKKGSELIRHRVVAQVLEGGIVVHSVVIGLSMGASKNPCTIKPLIAALCFHQLFEGMGLGGCILQGEYGMKIKGVMVLFFSITTPIGIGLGIGLSNLYNEKSPTALIVVGILNASSAGLLIYMSLVELLASDFMSPKLQQNLNLQFFCYLAVLLGAGAMSLMAKWA 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43351109 43352231 - evm.model.ptg000009l.346 HCH10g1216 553289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1216 349 Pfam ZIP Zinc transporter 53 346 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
HCH10g1216 349 PANTHER ZINC/IRON TRANSPORTER 49 348 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
HCH10g1216 349 NCBIfam ZIP zinc/iron transport family 42 349 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1216 HCH-Chr10:43351109 HCH3g0923 HCH-Chr3:8177614 1.70E-101 dispersed
HCH10g1208 HCH-Chr10:43074435 HCH10g1216 HCH-Chr10:43351109 5.80E-171 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1216 K14709 - rcu:8264630 429.483