Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1223 ATGAAGACTGGAAAGAGGAAGTTGAGGTTAAGCAAGATCTATTCATTTGCTTGTGGAAAAGCATCATTGAAAAATGATGATCATTCACAGATTGGGCAGGCGGGTTTTTCCCGGGTCGTTTTCTGCAACGATCCGGATTGTATGGAGGCCGGGATTCGGAATTATGTTGATAATTCCATCCGGTCTACGAAGTATACACCGGCCAATTTCTTGCCCAAGTCCTTGTTTGAGCAGTTCAGGAGAGTAGCTAATTTTTACTTCTTACTTGCTGGTATTCTGGCCTTTACTCCTCTTGCCCCTTTTGCTGCTGTCAGTGCAATTATCCCTCTCATTATAGTAACTGTCATAACAATGTGTAAAGAAGGTATTGAGGATTGGCGGCGAAAGGCGCAGGATATTGAAGTGAATAATAGAAAGGTTAAGGTACATCAAGGCAATGGAGTTTTCAATTATACTGAATGGAAAAAATTGAGGGTAGGGGATATAGTGAAGGTTGAAAAGAATGACTACTTTCCAGCTGACCTTCTTTTGCTTTCATCATGCTATGAGGATGGAATCTGTTATGTAGAAACAATGAATCTTGATGGGGAAACAAATCTTAAAGTAAAGCAAGCATTGGAAGTAACTGTGTTTGCGAATGAGGATTCTAACTTCCGTGACTTTAAGGCTACTATCAAATGTGAAGACCCGAATGCAAATCTGTACTCGTTTGTTGGAAGCATGGAGTTTGAAGAGCAACAATATCCACTATCTCCTCAACATCTTCTCCTGAGAGACTCTAAGCTGCGAAATACAGAATATGTATTTGGGGCTGTTGTCTTTACCGGTCAGGACTCAAAGGTTATTCAAAATTCTATTGATCCACCTTCTAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATTATCTATCTATTGCTATGCATTCTATTCTTGCTGGCTTTTGTTGGATCTATAGTCTTTGGCATCAAAACCAAAGATGATTTGAAAAATGGGAGGATGAAGAGATGGTATCTTAGACCAGATGACTCTACAATTTTCTTTGATCCCAAACAAGCACCAGCTGCTGGAATTTTTCACTTTCTTACAGCACTGATGTTGTATAACTACTTTATCCCTATATCCTTGTATGTGTCGATTGAAGTTGTGAAAGTTCTTCAGAGCATCTTCATCAATCAAGATGTTCATATGTACTATGAAGAAGCAGACAAACCAGCACATGCCCGCACCTCCAATTTGAACGAGGAACTTGGCCAAGTTGACACAATACTCTCTGATAAGACTGGAACTTTGACCTGCAACTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGAACAGCTTATGGAAATGTTGTCACTGAAGTTGAGAGAGCTATGGATAACAGAAATCAAAATGGTTCGTCAACACTTCATGAAAATGGAGATATGTATAATCACAATAAGGGTTCTTCGGATACAAATCCTCACATCAAGGGCTTTAATTTTAAGGACAAAAGGATTATGAATGGAAACTGGGTTAATGAACCTCATGTGGATGTGCTCCAAAAGTTTTTACGCCTGCTTGCAATTTGTCATACAGCTATTCCTGACGTGGATGAAAATACAGGCAAGGTTGCATATGAAGCTGAATCACCAGATGAAGCAGCATTTGTAGTTGCTGCCAGAGAAATTGGTTTTGAATTCTACCAGAGAACACAGACAAGTGTATCCGTCCGTGAATTGGATCCCACGTCTAGAAAGAAAGTTGAAAGGTCATATAAGCTTTTGAATGTTTTGGAGTTCAATAGCGCCAGGAAAAGGATGTCAGTCATCATTAGAAATGAAGAGGGGAAAGTGCTTTTACTTTGTAAAGGTGCTGACAGTGTCATGTTTGAGAGGCTTGCCAAGAATGGTAGTAAATTTGAAGAGAAAACGAAGGAGCACATTGATGAGTATGCTGATGCAGGGCTAAGGACCTTGGTACTTGCTTACCGTGAACTCGATGAGGAGGAATACAAGGAATTTGAAAGTAAATTCTATGCAGCAAAGAATTCAGTTAGTGCAGAAAGGGAGTCATTAATTGATAAAGTAACAGAACGTGTTGAGAGGGATCTAATTCTTCTTGGTGCCACAGCGGTTGAGGACAAGCTTCAAGATGGGGTCCCGGAATGCATAGACAAGCTCGCTCAAGCTGGAATTAAGATTTGGGTTTTGACTGGGGACAAGATGGAGACTGCCATCAATATTGGTTTTGCCTGTAGTTTGCTTAGACAAGGAATGAAACAGATTATTATTACTCTGGAGACACCAGAAATTAAAGCCTTGGAAAGGACTGGGGAGAAGGATATGATCACCAAGGCATCAAAGGAAAGTGTCATCCACAAGTTAACTCGAGGAAAGGCTCAGCTCACTTCATCGACTGGAAGCACTGAAGCCTATGCTTTGATAATTGATGGGAAATCACTCGCTTATGCTCTTGAGGATGATGTGAAGGATATGTTTTTTCAGCTTGCAGTTCGCTGTGCATCTGTAATCTGCTGTCGCTCATCCCCAAAGCAGAAGGCAATGGTTACTAAGTTAGTGAAAGTGGCTACGGGGAAGACAACATTAGGTATTGGTGATGGTGCAAATGACGTTGGAATGATTCAAGAAGCAGATATTGGAATTGGAATCAGTGGTGCTGAAGGAATGCAGGCAGTCATGTCCAGCGATATTGCAATTGCTCAGTTCAAATATTTGGAGCGTCTACTACTCGTGCATGGACATTGGTGTTATAGAAGGTTATCATCAATGATATGCTACTTTTTCTACAAAAATTTCACATTTGGTTTTACACTCTTCTTATATGAGTCCTATGCTTCATTCTCTGGGCAACCTGCATACAATGACTGGTTTATGTCACTTTATAATGTTTTGTTCTCCGCACTACCTGCTGTGGCTCTAGGGGTATTTGACCAGGATGTTTCTGCAAGATATTGTCTTAAGTTTCCTCTATTGTACCAACAAGGAGTGCAGAATGTCCTCTTCAGCTGGCGCCGGATTCTTAGTTGGATGTTCAACGGATTTTCCAGTGCCATGATCATTTTCTTTTTCTGTACAAGCGCATTGAGGACTCAGGCATTCAACTCTGATGGGAAAACTGTGGGGAGGGATATTTTAGGAGCAACAATGCTCTCATGTGTTGTTTGGGTCGTCAACTCGCAGATGGCACTTGCTGTTAGCTACTTCACCTTGTTACAGCACATTTTTATCTGGGCTTCAATTTTCATCTGGTACATTTTTCTCATGATATATGGAGCCTTTCCTTCCAGCATCTCTGGTAATGCATATCGCATCTTCGTCGAAGCCCTTGCCCCGTCTGCCTCTTATTGGCTTCTAGTGTTCTTTGTGGTGATGTCTACTCTCATTCCATTCTTTATATACTCAGCATTACAGATGAATTTCTTTCCCATGTACCATGAAAAAATTCAGTGGGTGAGGCACGAGGGTCAGGTAAACGATCCCGAGTTCGTCAATATGGTGAGGCAGAGATCATTGAGACCAACGACTGTTGGTTTCACTGCACGTTTGGCGGCCAAAATAAGAAGAGATAAATCATAA 3579 41.02 MKTGKRKLRLSKIYSFACGKASLKNDDHSQIGQAGFSRVVFCNDPDCMEAGIRNYVDNSIRSTKYTPANFLPKSLFEQFRRVANFYFLLAGILAFTPLAPFAAVSAIIPLIIVTVITMCKEGIEDWRRKAQDIEVNNRKVKVHQGNGVFNYTEWKKLRVGDIVKVEKNDYFPADLLLLSSCYEDGICYVETMNLDGETNLKVKQALEVTVFANEDSNFRDFKATIKCEDPNANLYSFVGSMEFEEQQYPLSPQHLLLRDSKLRNTEYVFGAVVFTGQDSKVIQNSIDPPSKRSKVEKKMDKIIYLLLCILFLLAFVGSIVFGIKTKDDLKNGRMKRWYLRPDDSTIFFDPKQAPAAGIFHFLTALMLYNYFIPISLYVSIEVVKVLQSIFINQDVHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGNVVTEVERAMDNRNQNGSSTLHENGDMYNHNKGSSDTNPHIKGFNFKDKRIMNGNWVNEPHVDVLQKFLRLLAICHTAIPDVDENTGKVAYEAESPDEAAFVVAAREIGFEFYQRTQTSVSVRELDPTSRKKVERSYKLLNVLEFNSARKRMSVIIRNEEGKVLLLCKGADSVMFERLAKNGSKFEEKTKEHIDEYADAGLRTLVLAYRELDEEEYKEFESKFYAAKNSVSAERESLIDKVTERVERDLILLGATAVEDKLQDGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIITLETPEIKALERTGEKDMITKASKESVIHKLTRGKAQLTSSTGSTEAYALIIDGKSLAYALEDDVKDMFFQLAVRCASVICCRSSPKQKAMVTKLVKVATGKTTLGIGDGANDVGMIQEADIGIGISGAEGMQAVMSSDIAIAQFKYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTLFLYESYASFSGQPAYNDWFMSLYNVLFSALPAVALGVFDQDVSARYCLKFPLLYQQGVQNVLFSWRRILSWMFNGFSSAMIIFFFCTSALRTQAFNSDGKTVGRDILGATMLSCVVWVVNSQMALAVSYFTLLQHIFIWASIFIWYIFLMIYGAFPSSISGNAYRIFVEALAPSASYWLLVFFVVMSTLIPFFIYSALQMNFFPMYHEKIQWVRHEGQVNDPEFVNMVRQRSLRPTTVGFTARLAAKIRRDKS 1192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43417310 43424066 - evm.model.ptg000009l.353 HCH10g1223 553296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1223 1192 NCBIfam phospholipid-translocating P-type ATPase 55 1150 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
HCH10g1223 1192 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
HCH10g1223 1192 PRINTS P-type cation-transporting ATPase superfamily signature 865 884 - -
HCH10g1223 1192 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 25 1156 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
HCH10g1223 1192 SUPERFAMILY Calcium ATPase, transduction domain A 139 282 IPR008250 -
HCH10g1223 1192 CDD P-type_ATPase_APLT_Dnf-like 57 1025 - -
HCH10g1223 1192 Gene3D - 421 435 IPR023214 -
HCH10g1223 1192 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1142 IPR023298 -
HCH10g1223 1192 Gene3D - 120 286 - -
HCH10g1223 1192 SFLD C1.7: P-type atpase like 406 916 - -
HCH10g1223 1192 FunFam Phospholipid-transporting ATPase 701 905 - -
HCH10g1223 1192 Pfam Phospholipid-translocating ATPase N-terminal 40 107 IPR032631 -
HCH10g1223 1192 SUPERFAMILY HAD-like 419 920 IPR036412 -
HCH10g1223 1192 Gene3D - 697 905 IPR023214 -
HCH10g1223 1192 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
HCH10g1223 1192 MobiDBLite consensus disorder prediction 467 488 - -
HCH10g1223 1192 SFLD p-type atpase 406 916 IPR044492 -
HCH10g1223 1192 FunFam Phospholipid-transporting ATPase 116 286 - -
HCH10g1223 1192 FunFam Phospholipid-transporting ATPase 543 701 - -
HCH10g1223 1192 Pfam Phospholipid-translocating P-type ATPase C-terminal 893 1143 IPR032630 -
HCH10g1223 1192 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 500 666 IPR023299 GO:0000166(InterPro)
HCH10g1223 1192 Pfam Cation transport ATPase (P-type) 523 627 - -
HCH10g1223 1192 Gene3D - 436 501 IPR023299 GO:0000166(InterPro)
HCH10g1223 1192 Gene3D - 540 677 IPR023299 GO:0000166(InterPro)
HCH10g1223 1192 NCBIfam HAD-IC family P-type ATPase 837 946 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1223 HCH-Chr10:43417310 HCH13g0821 HCH-Chr13:8064648 0.00E+00 dispersed
HCH1g0979 HCH-Chr1:57918754 HCH10g1223 HCH-Chr10:43417310 1.60E-271 transposed
HCH1g0823 HCH-Chr1:56880617 HCH10g1223 HCH-Chr10:43417310 0.00E+00 wgd
HCH10g1223 HCH-Chr10:43417310 HCH3g0149 HCH-Chr3:953368 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1223 K01530 - csv:101205800 2077.75