Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g1223 | ATGAAGACTGGAAAGAGGAAGTTGAGGTTAAGCAAGATCTATTCATTTGCTTGTGGAAAAGCATCATTGAAAAATGATGATCATTCACAGATTGGGCAGGCGGGTTTTTCCCGGGTCGTTTTCTGCAACGATCCGGATTGTATGGAGGCCGGGATTCGGAATTATGTTGATAATTCCATCCGGTCTACGAAGTATACACCGGCCAATTTCTTGCCCAAGTCCTTGTTTGAGCAGTTCAGGAGAGTAGCTAATTTTTACTTCTTACTTGCTGGTATTCTGGCCTTTACTCCTCTTGCCCCTTTTGCTGCTGTCAGTGCAATTATCCCTCTCATTATAGTAACTGTCATAACAATGTGTAAAGAAGGTATTGAGGATTGGCGGCGAAAGGCGCAGGATATTGAAGTGAATAATAGAAAGGTTAAGGTACATCAAGGCAATGGAGTTTTCAATTATACTGAATGGAAAAAATTGAGGGTAGGGGATATAGTGAAGGTTGAAAAGAATGACTACTTTCCAGCTGACCTTCTTTTGCTTTCATCATGCTATGAGGATGGAATCTGTTATGTAGAAACAATGAATCTTGATGGGGAAACAAATCTTAAAGTAAAGCAAGCATTGGAAGTAACTGTGTTTGCGAATGAGGATTCTAACTTCCGTGACTTTAAGGCTACTATCAAATGTGAAGACCCGAATGCAAATCTGTACTCGTTTGTTGGAAGCATGGAGTTTGAAGAGCAACAATATCCACTATCTCCTCAACATCTTCTCCTGAGAGACTCTAAGCTGCGAAATACAGAATATGTATTTGGGGCTGTTGTCTTTACCGGTCAGGACTCAAAGGTTATTCAAAATTCTATTGATCCACCTTCTAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATTATCTATCTATTGCTATGCATTCTATTCTTGCTGGCTTTTGTTGGATCTATAGTCTTTGGCATCAAAACCAAAGATGATTTGAAAAATGGGAGGATGAAGAGATGGTATCTTAGACCAGATGACTCTACAATTTTCTTTGATCCCAAACAAGCACCAGCTGCTGGAATTTTTCACTTTCTTACAGCACTGATGTTGTATAACTACTTTATCCCTATATCCTTGTATGTGTCGATTGAAGTTGTGAAAGTTCTTCAGAGCATCTTCATCAATCAAGATGTTCATATGTACTATGAAGAAGCAGACAAACCAGCACATGCCCGCACCTCCAATTTGAACGAGGAACTTGGCCAAGTTGACACAATACTCTCTGATAAGACTGGAACTTTGACCTGCAACTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGAACAGCTTATGGAAATGTTGTCACTGAAGTTGAGAGAGCTATGGATAACAGAAATCAAAATGGTTCGTCAACACTTCATGAAAATGGAGATATGTATAATCACAATAAGGGTTCTTCGGATACAAATCCTCACATCAAGGGCTTTAATTTTAAGGACAAAAGGATTATGAATGGAAACTGGGTTAATGAACCTCATGTGGATGTGCTCCAAAAGTTTTTACGCCTGCTTGCAATTTGTCATACAGCTATTCCTGACGTGGATGAAAATACAGGCAAGGTTGCATATGAAGCTGAATCACCAGATGAAGCAGCATTTGTAGTTGCTGCCAGAGAAATTGGTTTTGAATTCTACCAGAGAACACAGACAAGTGTATCCGTCCGTGAATTGGATCCCACGTCTAGAAAGAAAGTTGAAAGGTCATATAAGCTTTTGAATGTTTTGGAGTTCAATAGCGCCAGGAAAAGGATGTCAGTCATCATTAGAAATGAAGAGGGGAAAGTGCTTTTACTTTGTAAAGGTGCTGACAGTGTCATGTTTGAGAGGCTTGCCAAGAATGGTAGTAAATTTGAAGAGAAAACGAAGGAGCACATTGATGAGTATGCTGATGCAGGGCTAAGGACCTTGGTACTTGCTTACCGTGAACTCGATGAGGAGGAATACAAGGAATTTGAAAGTAAATTCTATGCAGCAAAGAATTCAGTTAGTGCAGAAAGGGAGTCATTAATTGATAAAGTAACAGAACGTGTTGAGAGGGATCTAATTCTTCTTGGTGCCACAGCGGTTGAGGACAAGCTTCAAGATGGGGTCCCGGAATGCATAGACAAGCTCGCTCAAGCTGGAATTAAGATTTGGGTTTTGACTGGGGACAAGATGGAGACTGCCATCAATATTGGTTTTGCCTGTAGTTTGCTTAGACAAGGAATGAAACAGATTATTATTACTCTGGAGACACCAGAAATTAAAGCCTTGGAAAGGACTGGGGAGAAGGATATGATCACCAAGGCATCAAAGGAAAGTGTCATCCACAAGTTAACTCGAGGAAAGGCTCAGCTCACTTCATCGACTGGAAGCACTGAAGCCTATGCTTTGATAATTGATGGGAAATCACTCGCTTATGCTCTTGAGGATGATGTGAAGGATATGTTTTTTCAGCTTGCAGTTCGCTGTGCATCTGTAATCTGCTGTCGCTCATCCCCAAAGCAGAAGGCAATGGTTACTAAGTTAGTGAAAGTGGCTACGGGGAAGACAACATTAGGTATTGGTGATGGTGCAAATGACGTTGGAATGATTCAAGAAGCAGATATTGGAATTGGAATCAGTGGTGCTGAAGGAATGCAGGCAGTCATGTCCAGCGATATTGCAATTGCTCAGTTCAAATATTTGGAGCGTCTACTACTCGTGCATGGACATTGGTGTTATAGAAGGTTATCATCAATGATATGCTACTTTTTCTACAAAAATTTCACATTTGGTTTTACACTCTTCTTATATGAGTCCTATGCTTCATTCTCTGGGCAACCTGCATACAATGACTGGTTTATGTCACTTTATAATGTTTTGTTCTCCGCACTACCTGCTGTGGCTCTAGGGGTATTTGACCAGGATGTTTCTGCAAGATATTGTCTTAAGTTTCCTCTATTGTACCAACAAGGAGTGCAGAATGTCCTCTTCAGCTGGCGCCGGATTCTTAGTTGGATGTTCAACGGATTTTCCAGTGCCATGATCATTTTCTTTTTCTGTACAAGCGCATTGAGGACTCAGGCATTCAACTCTGATGGGAAAACTGTGGGGAGGGATATTTTAGGAGCAACAATGCTCTCATGTGTTGTTTGGGTCGTCAACTCGCAGATGGCACTTGCTGTTAGCTACTTCACCTTGTTACAGCACATTTTTATCTGGGCTTCAATTTTCATCTGGTACATTTTTCTCATGATATATGGAGCCTTTCCTTCCAGCATCTCTGGTAATGCATATCGCATCTTCGTCGAAGCCCTTGCCCCGTCTGCCTCTTATTGGCTTCTAGTGTTCTTTGTGGTGATGTCTACTCTCATTCCATTCTTTATATACTCAGCATTACAGATGAATTTCTTTCCCATGTACCATGAAAAAATTCAGTGGGTGAGGCACGAGGGTCAGGTAAACGATCCCGAGTTCGTCAATATGGTGAGGCAGAGATCATTGAGACCAACGACTGTTGGTTTCACTGCACGTTTGGCGGCCAAAATAAGAAGAGATAAATCATAA | 3579 | 41.02 | MKTGKRKLRLSKIYSFACGKASLKNDDHSQIGQAGFSRVVFCNDPDCMEAGIRNYVDNSIRSTKYTPANFLPKSLFEQFRRVANFYFLLAGILAFTPLAPFAAVSAIIPLIIVTVITMCKEGIEDWRRKAQDIEVNNRKVKVHQGNGVFNYTEWKKLRVGDIVKVEKNDYFPADLLLLSSCYEDGICYVETMNLDGETNLKVKQALEVTVFANEDSNFRDFKATIKCEDPNANLYSFVGSMEFEEQQYPLSPQHLLLRDSKLRNTEYVFGAVVFTGQDSKVIQNSIDPPSKRSKVEKKMDKIIYLLLCILFLLAFVGSIVFGIKTKDDLKNGRMKRWYLRPDDSTIFFDPKQAPAAGIFHFLTALMLYNYFIPISLYVSIEVVKVLQSIFINQDVHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGNVVTEVERAMDNRNQNGSSTLHENGDMYNHNKGSSDTNPHIKGFNFKDKRIMNGNWVNEPHVDVLQKFLRLLAICHTAIPDVDENTGKVAYEAESPDEAAFVVAAREIGFEFYQRTQTSVSVRELDPTSRKKVERSYKLLNVLEFNSARKRMSVIIRNEEGKVLLLCKGADSVMFERLAKNGSKFEEKTKEHIDEYADAGLRTLVLAYRELDEEEYKEFESKFYAAKNSVSAERESLIDKVTERVERDLILLGATAVEDKLQDGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIITLETPEIKALERTGEKDMITKASKESVIHKLTRGKAQLTSSTGSTEAYALIIDGKSLAYALEDDVKDMFFQLAVRCASVICCRSSPKQKAMVTKLVKVATGKTTLGIGDGANDVGMIQEADIGIGISGAEGMQAVMSSDIAIAQFKYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTLFLYESYASFSGQPAYNDWFMSLYNVLFSALPAVALGVFDQDVSARYCLKFPLLYQQGVQNVLFSWRRILSWMFNGFSSAMIIFFFCTSALRTQAFNSDGKTVGRDILGATMLSCVVWVVNSQMALAVSYFTLLQHIFIWASIFIWYIFLMIYGAFPSSISGNAYRIFVEALAPSASYWLLVFFVVMSTLIPFFIYSALQMNFFPMYHEKIQWVRHEGQVNDPEFVNMVRQRSLRPTTVGFTARLAAKIRRDKS | 1192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 43417310 | 43424066 | - | evm.model.ptg000009l.353 | HCH10g1223 | 553296 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g1223 | 1192 | NCBIfam | phospholipid-translocating P-type ATPase | 55 | 1150 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
HCH10g1223 | 1192 | PRINTS | P-type cation-transporting ATPase superfamily signature | 424 | 438 | - | - | |
HCH10g1223 | 1192 | PRINTS | P-type cation-transporting ATPase superfamily signature | 865 | 884 | - | - | |
HCH10g1223 | 1192 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 25 | 1156 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
HCH10g1223 | 1192 | SUPERFAMILY | Calcium ATPase, transduction domain A | 139 | 282 | IPR008250 | - | |
HCH10g1223 | 1192 | CDD | P-type_ATPase_APLT_Dnf-like | 57 | 1025 | - | - | |
HCH10g1223 | 1192 | Gene3D | - | 421 | 435 | IPR023214 | - | |
HCH10g1223 | 1192 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 53 | 1142 | IPR023298 | - | |
HCH10g1223 | 1192 | Gene3D | - | 120 | 286 | - | - | |
HCH10g1223 | 1192 | SFLD | C1.7: P-type atpase like | 406 | 916 | - | - | |
HCH10g1223 | 1192 | FunFam | Phospholipid-transporting ATPase | 701 | 905 | - | - | |
HCH10g1223 | 1192 | Pfam | Phospholipid-translocating ATPase N-terminal | 40 | 107 | IPR032631 | - | |
HCH10g1223 | 1192 | SUPERFAMILY | HAD-like | 419 | 920 | IPR036412 | - | |
HCH10g1223 | 1192 | Gene3D | - | 697 | 905 | IPR023214 | - | |
HCH10g1223 | 1192 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 426 | 432 | IPR018303 | - | |
HCH10g1223 | 1192 | MobiDBLite | consensus disorder prediction | 467 | 488 | - | - | |
HCH10g1223 | 1192 | SFLD | p-type atpase | 406 | 916 | IPR044492 | - | |
HCH10g1223 | 1192 | FunFam | Phospholipid-transporting ATPase | 116 | 286 | - | - | |
HCH10g1223 | 1192 | FunFam | Phospholipid-transporting ATPase | 543 | 701 | - | - | |
HCH10g1223 | 1192 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 893 | 1143 | IPR032630 | - | |
HCH10g1223 | 1192 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 500 | 666 | IPR023299 | GO:0000166(InterPro) | |
HCH10g1223 | 1192 | Pfam | Cation transport ATPase (P-type) | 523 | 627 | - | - | |
HCH10g1223 | 1192 | Gene3D | - | 436 | 501 | IPR023299 | GO:0000166(InterPro) | |
HCH10g1223 | 1192 | Gene3D | - | 540 | 677 | IPR023299 | GO:0000166(InterPro) | |
HCH10g1223 | 1192 | NCBIfam | HAD-IC family P-type ATPase | 837 | 946 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g1223 | HCH-Chr10:43417310 | HCH13g0821 | HCH-Chr13:8064648 | 0.00E+00 | dispersed | |
HCH1g0979 | HCH-Chr1:57918754 | HCH10g1223 | HCH-Chr10:43417310 | 1.60E-271 | transposed | |
HCH1g0823 | HCH-Chr1:56880617 | HCH10g1223 | HCH-Chr10:43417310 | 0.00E+00 | wgd | |
HCH10g1223 | HCH-Chr10:43417310 | HCH3g0149 | HCH-Chr3:953368 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g1223 | K01530 | - | csv:101205800 | 2077.75 |