Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g1237 | ATGAAGGAAGAAGATAGAGGAGAGTTCTTTCAAGGGTTTCAAGAACAGCTTCTAATGCATCAATACCATCAGATGCAGCAAAATGGCTTGATTTTCCCTGAAGTGCAGCCATGGCTCCCTCAAGTCCCCGGCTTCAACCCGTTCCGAGAACACGATCCGTTTCTTTCGTCTCCGACACCGGCACTTCCTCCGCCGCCACCTTCTTACTCTAGCTTCTTCAATAGATCATCATCAAGAAACCCTTCTCTACAATTTCCTTATGATCTTGCTTCTTCCAATAATCTTGGAATTGGACAAATGTGTCAACCCGGTTCCGATCCATTCGGGCTTCAAGCCGAGCTTAGTAAGATGACGGCTCAAGAAATCATGGATGCTAAAGCTCTGGCAGCTTCAAAAAGTCACAGTGAAGCTGAGAGGAGGAGGAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTTCCTAGCACCACTAAAACGGACAAGGCGTCATTGTTAGCAGAAGTAATACAACATGTTAAAGAGTTGAAACGGCAGACGACATTGATTGCTGATATAAGTCTGGTGCCAACCGAGCTCGATGAGATCTCGGTCGATGTCGATGCATCAGACGAGGACGGAAAATTTGTGATCAAAGCCTCACTTTGTTGTGAAGACAGGACTGATCTTTTGCCTCAGATCATCAAGACCTTGAAGTCACTTCGTTTAAGAACCCTCAAAGCTGAAATCACCACCCTTGGAGGTCGAGTAAAGAACGTCTTGTTCATCACCGGGGAAGACGATTCGAGCAGTGGCAGTGACCAACAAGAAGCACAACAGCAACAGTATTGTATAAATTCAATTCAAGAAGCACTCAAGGCAGTGATGGAGAAGGCAGGTGGAGAGGATCAGTCTTCTTCAGGCAGTATCAAGAGACAAAGGACTAATCATAACATCAATATCATCGAACACAGGTCTCTCTAA | 969 | 44.99 | MKEEDRGEFFQGFQEQLLMHQYHQMQQNGLIFPEVQPWLPQVPGFNPFREHDPFLSSPTPALPPPPPSYSSFFNRSSSRNPSLQFPYDLASSNNLGIGQMCQPGSDPFGLQAELSKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADISLVPTELDEISVDVDASDEDGKFVIKASLCCEDRTDLLPQIIKTLKSLRLRTLKAEITTLGGRVKNVLFITGEDDSSSGSDQQEAQQQQYCINSIQEALKAVMEKAGGEDQSSSGSIKRQRTNHNINIIEHRSL | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 44052016 | 44053631 | + | evm.model.ptg000009l.367 | HCH10g1237 | 553310 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g1237 | 322 | MobiDBLite | consensus disorder prediction | 297 | 311 | - | - | |
HCH10g1237 | 322 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 97 | 312 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g1237 | 322 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 129 | 178 | IPR011598 | GO:0046983(InterPro) | |
HCH10g1237 | 322 | MobiDBLite | consensus disorder prediction | 293 | 322 | - | - | |
HCH10g1237 | 322 | FunFam | transcription factor bHLH30 | 124 | 187 | - | - | |
HCH10g1237 | 322 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 133 | 183 | IPR036638 | GO:0046983(InterPro) | |
HCH10g1237 | 322 | Gene3D | - | 124 | 184 | IPR036638 | GO:0046983(InterPro) | |
HCH10g1237 | 322 | SMART | finulus | 135 | 184 | IPR011598 | GO:0046983(InterPro) | |
HCH10g1237 | 322 | MobiDBLite | consensus disorder prediction | 50 | 75 | - | - | |
HCH10g1237 | 322 | Pfam | Helix-loop-helix DNA-binding domain | 132 | 179 | IPR011598 | GO:0046983(InterPro) | |
HCH10g1237 | 322 | CDD | bHLH_AtAIG1_like | 124 | 203 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g1237 | HCH-Chr10:44052016 | HCH9g1299 | HCH-Chr9:40808004 | 1.50E-40 | dispersed | |
HCH1g0806 | HCH-Chr1:56753004 | HCH10g1237 | HCH-Chr10:44052016 | 1.80E-93 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32494 | PF00010 | HLH | 1.50E-12 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g1237 | - | - | - | 0.0 |