Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1237 ATGAAGGAAGAAGATAGAGGAGAGTTCTTTCAAGGGTTTCAAGAACAGCTTCTAATGCATCAATACCATCAGATGCAGCAAAATGGCTTGATTTTCCCTGAAGTGCAGCCATGGCTCCCTCAAGTCCCCGGCTTCAACCCGTTCCGAGAACACGATCCGTTTCTTTCGTCTCCGACACCGGCACTTCCTCCGCCGCCACCTTCTTACTCTAGCTTCTTCAATAGATCATCATCAAGAAACCCTTCTCTACAATTTCCTTATGATCTTGCTTCTTCCAATAATCTTGGAATTGGACAAATGTGTCAACCCGGTTCCGATCCATTCGGGCTTCAAGCCGAGCTTAGTAAGATGACGGCTCAAGAAATCATGGATGCTAAAGCTCTGGCAGCTTCAAAAAGTCACAGTGAAGCTGAGAGGAGGAGGAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTTCCTAGCACCACTAAAACGGACAAGGCGTCATTGTTAGCAGAAGTAATACAACATGTTAAAGAGTTGAAACGGCAGACGACATTGATTGCTGATATAAGTCTGGTGCCAACCGAGCTCGATGAGATCTCGGTCGATGTCGATGCATCAGACGAGGACGGAAAATTTGTGATCAAAGCCTCACTTTGTTGTGAAGACAGGACTGATCTTTTGCCTCAGATCATCAAGACCTTGAAGTCACTTCGTTTAAGAACCCTCAAAGCTGAAATCACCACCCTTGGAGGTCGAGTAAAGAACGTCTTGTTCATCACCGGGGAAGACGATTCGAGCAGTGGCAGTGACCAACAAGAAGCACAACAGCAACAGTATTGTATAAATTCAATTCAAGAAGCACTCAAGGCAGTGATGGAGAAGGCAGGTGGAGAGGATCAGTCTTCTTCAGGCAGTATCAAGAGACAAAGGACTAATCATAACATCAATATCATCGAACACAGGTCTCTCTAA 969 44.99 MKEEDRGEFFQGFQEQLLMHQYHQMQQNGLIFPEVQPWLPQVPGFNPFREHDPFLSSPTPALPPPPPSYSSFFNRSSSRNPSLQFPYDLASSNNLGIGQMCQPGSDPFGLQAELSKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADISLVPTELDEISVDVDASDEDGKFVIKASLCCEDRTDLLPQIIKTLKSLRLRTLKAEITTLGGRVKNVLFITGEDDSSSGSDQQEAQQQQYCINSIQEALKAVMEKAGGEDQSSSGSIKRQRTNHNINIIEHRSL 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44052016 44053631 + evm.model.ptg000009l.367 HCH10g1237 553310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1237 322 MobiDBLite consensus disorder prediction 297 311 - -
HCH10g1237 322 PANTHER TRANSCRIPTION FACTOR BHLH30 97 312 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g1237 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983(InterPro)
HCH10g1237 322 MobiDBLite consensus disorder prediction 293 322 - -
HCH10g1237 322 FunFam transcription factor bHLH30 124 187 - -
HCH10g1237 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 183 IPR036638 GO:0046983(InterPro)
HCH10g1237 322 Gene3D - 124 184 IPR036638 GO:0046983(InterPro)
HCH10g1237 322 SMART finulus 135 184 IPR011598 GO:0046983(InterPro)
HCH10g1237 322 MobiDBLite consensus disorder prediction 50 75 - -
HCH10g1237 322 Pfam Helix-loop-helix DNA-binding domain 132 179 IPR011598 GO:0046983(InterPro)
HCH10g1237 322 CDD bHLH_AtAIG1_like 124 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1237 HCH-Chr10:44052016 HCH9g1299 HCH-Chr9:40808004 1.50E-40 dispersed
HCH1g0806 HCH-Chr1:56753004 HCH10g1237 HCH-Chr10:44052016 1.80E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32494 PF00010 HLH 1.50E-12 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1237 - - - 0.0