Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1238 ATGGTGGTAGAGACCAGAGTAGTAACATGGAGCAGGGTAGCCAAGTCTTTTCAGGCTATGGCTGCTCATGGCTTTCTTTTCTCCTTCACCCTTTTTCTAGCTCTCAAGCTTGATCATTCCATCAAAGTCTCTTGGTGGTTTACATTTTCGCCTTTGTGGCTTTTTCATTTAGTTGCAGCAAGAGGCAGGTTTTCTCTACCTGCTCCTTCAATGCCTCGTGACCGACATTGGGCACCGTGGCATGCTGTCATGGCAACACCATTGCTTGTTGCTTTTGAACTACTTCTTTGTATATATTTAGAGTGCATTTATGTTGTAAATTTGAAGATTGTCTTTGTTCCCCTCCTAATGTTTGAGCTAGCAATTTTGATTGATAATATCAGGATGTGTAGAGCTTTACTACCTGGAGAAGAAGAAGAAAATGTGAGCGATGATATTATATGGGAAACTCTTCCTCACTTCTGGGTCTCAATTTCTATGGTTTTCTTCATTGCCGCAACCGTGTTCACTCTTCTAAAGCTATGTGGCGATGTAGCTGCTTTGGGCTGGTGGGATTTATTTATAAATTTCAGTATTGCCGAGTGCTTCGCATTTCTTGTTTGCACGAAATGGTACAATCCTTTAATCCATAGGCATTCTCTCATTGGAGAATCAAGTTCATCTTCAATGTCTATTAGATATGTTGATTGGGATAGAGGTATAGTGGTTTCTTCTGATGAGGATCAGCACCAAGTTAGAATTTGCAATCTGCAGGATATTGGTGGACACATCATGAAAATTCCTTTTATCATTTTCCAAATCGTGCTTTTTATGCGCTTAGAGGGAACACCAAGTAATGCTTCATATATTCCCTGTTTGGCTCTGTTCTCTCCTCTTCTCTTACTGCAAGGAGTAGGTTTTATATTTTCTGCATATAGATCAGTAGAAAAAATTGTATTTTTACTTTTTGGTGGACCTTCTTCTGTAAGATACCGTAGCCTAAGGTCACAGGCTCGTGAGCTTTTAGGGTTCATGCACCGTGGATCAAGGTTGCTAGGTTGGTGGTCAATCGATGAAGCCACTCAAGAGGAACAAGCTAAACTCTTTTCTCCCGGAACTTCTGGGTACGATACTTTCTCAGCAGAGACAGTAAAGAAAATGCCCAAAACCAACCTCATTGATGAGATTTGGAGACTACAAGCTGCATTAAATCAGCAGACAGAAGTTACCAAATTGAGCCGGCAAGAGCACGAAAAACTTCTCAATGAAAAGATTCTCTGTAGAGTATGCTTTGATGAACACATTGATATGGTTCTTCTTCCATGTAGGCATCACATTCTCTGCAGCACTTGCTGTGGAAAGTGTAACAGATGCCCAATCTGCCGTGAATCGATTGAAGAACGGCTGCCTGTAAATGATGTTTAA 1404 40.95 MVVETRVVTWSRVAKSFQAMAAHGFLFSFTLFLALKLDHSIKVSWWFTFSPLWLFHLVAARGRFSLPAPSMPRDRHWAPWHAVMATPLLVAFELLLCIYLECIYVVNLKIVFVPLLMFELAILIDNIRMCRALLPGEEEENVSDDIIWETLPHFWVSISMVFFIAATVFTLLKLCGDVAALGWWDLFINFSIAECFAFLVCTKWYNPLIHRHSLIGESSSSSMSIRYVDWDRGIVVSSDEDQHQVRICNLQDIGGHIMKIPFIIFQIVLFMRLEGTPSNASYIPCLALFSPLLLLQGVGFIFSAYRSVEKIVFLLFGGPSSVRYRSLRSQARELLGFMHRGSRLLGWWSIDEATQEEQAKLFSPGTSGYDTFSAETVKKMPKTNLIDEIWRLQAALNQQTEVTKLSRQEHEKLLNEKILCRVCFDEHIDMVLLPCRHHILCSTCCGKCNRCPICRESIEERLPVNDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44068284 44074675 + evm.model.ptg000009l.368 HCH10g1238 553311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1238 467 Pfam Transmembrane Fragile-X-F protein 35 295 IPR019396 -
HCH10g1238 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 9 467 - -
HCH10g1238 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 464 IPR013083 -
HCH10g1238 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
HCH10g1238 467 Pfam Zinc finger, C3HC4 type (RING finger) 418 460 - -
HCH10g1238 467 SUPERFAMILY RING/U-box 411 461 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1238 HCH-Chr10:44068284 HCH7g1169 HCH-Chr7:44553207 4.60E-06 dispersed
HCH10g1238 HCH-Chr10:44068284 HCH10g1240 HCH-Chr10:44142643 6.20E-253 proximal
HCH3g0939 HCH-Chr3:8769001 HCH10g1238 HCH-Chr10:44068284 4.00E-57 transposed
HCH6g0528 HCH-Chr6:25650488 HCH10g1238 HCH-Chr10:44068284 3.10E-57 transposed
HCH10g1238 HCH-Chr10:44068284 HCH8g1191 HCH-Chr8:47378394 2.70E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1238 - - - 0.0