Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1245 ATGGAAGCAAGTTCTGTAGATGAAAGCACAGCCAGTGACTCCACCTCCATTTCTCCGGTGACTCCATTATTTTTCCCCGTCGTCAAGTCTCCGATGCCGGCAACGGAAATTTCCCTTGTCGGCAGCGGCGCAAGTGTCGTTTTCGACTCTGAAACGAGCGGTGGCATCGAATCGGAACCTCGAAAACTCCCTTCTTCTCGATACAAAGGTGTCGTTCCTCAGCCGAACGGCCGGTGGGGAGCTCAGATTTACGAGAAACACCAAAGAGTGTGGCTCGGAACTTTCAACGAAGAAAACGAAGCTGCAAAAGCTTACGACATCGCCGCCCAACGGTTCCGCGGCCGCGATGCCGTAACCAACTTCAAACCCTTATCGGAAACCGATAACGATATCGAAACCCAGTTTCTAAAATCTCATTCCAAGGCCGAGATCGTTGACATGCTACGTAAACACACGTTCAATGACGAGCTTCAACAAAGCAAACGTAACCATGGATTATTACAAATAGGTTTAATGAGAAACGGCGAAACCGACGTTCTTACGGTCCCCCGCGATTCGAAAAACGGTTGCGACCGGGAACTTCTCTTCGAAAAAACAGTCACACCAAGTGATGTAGGGAAATTGAACCGTCTAGTGATACCAAAGCAACACGCCGAGAAAAACTTCCCGTTGCCGGCGGGTATCGCTTCGTCGAAAGGCATGCTATTGAATTTCGAGGACGTCGGCGGGAAAGTATGGCGGTTTCGGTACTCGTATTGGAATAGTAGCCAAAGCTATGTGTTGACAAAAGGGTGGAGCCGGTTTGTGAAGGAGAAGAATCTTAACGCCGGTGATGTCGTCAGCTTTTCCCGATCAACCGGACCGGAGAAGCAGCTATATATTGACGGAAAGACGAAGAACGGTTCGATATCGAAGCCGGTTCCGATAGTGAAGCTGTTTGGAGTTAATATTATGGAAGTTCCTGAGATTTGTGGAGTGGAGAGGAAGAGAGAAAGAGGAGTTTTGGATTTAGAATGTATTAAGAAGCAAAGAATAATCAAAGCTTTGTAA 1050 47.9 MEASSVDESTASDSTSISPVTPLFFPVVKSPMPATEISLVGSGASVVFDSETSGGIESEPRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEENEAAKAYDIAAQRFRGRDAVTNFKPLSETDNDIETQFLKSHSKAEIVDMLRKHTFNDELQQSKRNHGLLQIGLMRNGETDVLTVPRDSKNGCDRELLFEKTVTPSDVGKLNRLVIPKQHAEKNFPLPAGIASSKGMLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLNAGDVVSFSRSTGPEKQLYIDGKTKNGSISKPVPIVKLFGVNIMEVPEICGVERKRERGVLDLECIKKQRIIKAL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44281681 44282730 + evm.model.ptg000009l.375 HCH10g1245 553318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1245 349 Pfam B3 DNA binding domain 196 286 IPR003340 GO:0003677(InterPro)
HCH10g1245 349 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g1245 349 CDD B3_DNA 195 285 IPR003340 GO:0003677(InterPro)
HCH10g1245 349 Pfam AP2 domain 66 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g1245 349 SMART rav1_2 67 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g1245 349 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677(InterPro)
HCH10g1245 349 CDD AP2 66 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g1245 349 FunFam AP2 domain-containing protein RAP2.8 66 123 - -
HCH10g1245 349 Gene3D - 185 305 IPR015300 -
HCH10g1245 349 SUPERFAMILY DNA-binding pseudobarrel domain 193 295 IPR015300 -
HCH10g1245 349 SMART B3_2 196 298 IPR003340 GO:0003677(InterPro)
HCH10g1245 349 ProSiteProfiles B3 DNA-binding domain profile. 196 298 IPR003340 GO:0003677(InterPro)
HCH10g1245 349 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g1245 349 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 66 299 IPR044800 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1245 HCH-Chr10:44281681 HCH8g0487 HCH-Chr8:41117571 3.50E-43 dispersed
HCH14g0875 HCH-Chr14:36506264 HCH10g1245 HCH-Chr10:44281681 2.60E-13 transposed
HCH7g1801 HCH-Chr7:49546770 HCH10g1245 HCH-Chr10:44281681 6.60E-31 transposed
HCH8g0924 HCH-Chr8:45540073 HCH10g1245 HCH-Chr10:44281681 8.20E-45 transposed
HCH1g0802 HCH-Chr1:56706788 HCH10g1245 HCH-Chr10:44281681 1.30E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32495 PF02362 B3 1.70E-28 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1245 K09287 - vvi:100262843 444.121