Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1249 ATGCAGCAGAATTCCAACTTGACTTGCCTATCATCAAGTGAGAGTGCCTGTATAGAACCAGATGAAGAAGGAGAAGACTCCATTTTCCTTTCCCTTTGTCCTCCTGGCAGCACTAATATTTCTTCCAAACACCAACCCATTTACAGAAGAACTTCCTTCCAAAAACAACCTCAAAGTTTCCAAAACCCTAATAATGGTCAGGATTCTGCTTCTGTTACTGTGGCAATGCACATTGGTCCACCTCTCTCTTCTGCTCCCACATCCTCTCATGAATCTTCCCTTCACTCAGGTGAAGGCCAATATTGGATTCCTTCTCCTGCCCAAATCCTTGTTGGTCCTACCCAGTTCTCTTGCTCTGTCTGCAGCAAAACCTTCAACAGATATAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGGAAAGGACCAGAATCACTGAGAGGAACAAAGCCAGCTTCATCAATGTTGAGACTTCCATGCTACTGCTGTGCAGAGGGCTGCAAGAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGATTTCAGAACTCTTCAAACGCATTACAAGAGAAAACACGGATCAAAGCCATTTAATTGTAGGAAATGTGGGAAGCCATTTGCAGTTAGAGGAGATTGGAGGACTCATGAGAAGAACTGTGGGAAGCTTTGGTTTTGTATTTGTGGATCTGATTTCAAGCACAAGAGATCCCTTAAAGATCATGTTAGAGCTTTTGGAGATGGCCATGCACCACATACTGTGGAAGTTTGTGAGGTTGAAGATGATGATTGGGATGATGAAGATGATGATGATCAACATATGAATGGAGCAGCTCATGGGTGGTCTGTTTTCCATTAA 867 43.6 MQQNSNLTCLSSSESACIEPDEEGEDSIFLSLCPPGSTNISSKHQPIYRRTSFQKQPQSFQNPNNGQDSASVTVAMHIGPPLSSAPTSSHESSLHSGEGQYWIPSPAQILVGPTQFSCSVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGSKPFNCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVEVCEVEDDDWDDEDDDDQHMNGAAHGWSVFH 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44385413 44386733 - evm.model.ptg000009l.379 HCH10g1249 553322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1249 288 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
HCH10g1249 288 Gene3D Classic Zinc Finger 199 271 - -
HCH10g1249 288 PANTHER ZINC FINGER PROTEIN WIP2 91 275 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
HCH10g1249 288 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 200 224 - -
HCH10g1249 288 SUPERFAMILY beta-beta-alpha zinc fingers 184 221 IPR036236 -
HCH10g1249 288 FunFam Zinc finger protein WIP2 170 252 - -
HCH10g1249 288 SMART c2h2final6 201 221 IPR013087 -
HCH10g1249 288 SMART c2h2final6 164 196 IPR013087 -
HCH10g1249 288 SMART c2h2final6 116 138 IPR013087 -
HCH10g1249 288 Gene3D Classic Zinc Finger 115 138 - -
HCH10g1249 288 SUPERFAMILY beta-beta-alpha zinc fingers 112 138 IPR036236 -
HCH10g1249 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1249 HCH-Chr10:44385413 HCH9g1110 HCH-Chr9:13492435 8.60E-88 dispersed
HCH10g1249 HCH-Chr10:44385413 HCH2g1387 HCH-Chr2:55650887 3.50E-89 transposed
HCH10g1249 HCH-Chr10:44385413 HCH11g0605 HCH-Chr11:14092067 3.50E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32496 PF13912 zf-C2H2_6 0.00016 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1249 - - - 0.0