Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1250 ATGATTTTCTCCGACAAAATGCAAGAAATTGCAACCAAAATGGGTTTTACGTTTAAGGATTATTTGCAAACTCTTGAAGAAGAACACAAAAAAGTTCTCATGTTTCAACGAGAACTCCCTCTTTGTTTAGAGCTTGTAACTCAAGCTATTGATTATTGCAAGAAAGAGCTCTCAATGACGACGGAGGAATATTTTCATGGAGATGAATTAGAGTGCTCGGAGCAAACTTCAAGCGCAGAAATAGTTCCGATTTTGGAAGAATTTATTCCTCTTAAGAAAAATAGTTCTTCTATTTTAGAAGAAAAGAAATCTCATCAAAATAATATGGAGAAAGAGAATTTGTGTCAATCAGATTGGCTTCGATCTGCTCAGCTTTGGAACCAAATTTCCTCTGATCCAATTCCAACTCATAATCAAGATTTGCATGAGAAGACGTCTGTTGAAGAGACGTGTTTTGTGGAGGTGAAGAGAAATGGTGGCGCTTTTCAACCATTTCAAAGAGAGAAAACTGTGAATAAGATTGGTAATAATCATGAACATGATCAATCTCCAGCCGGCGGAGGAGGGACTTCTTCCTCGTCGACAGCGGAAACTGCCTCCGCAGGCAGCGGAGGAAGCAGTAAGAGAGAAGAGAAAGAAAAGGAGAATCATAGAAAGCAAAGACGGTGTTGGTCGCCGGAGCTACACCGACGGTTCTTACATGCTCTTCAACAACTCGGCGGTTCCCATGTGGCGACGCCTAAGCAAATTAGAGAATCTATGAAAGTTGATGGTCTCACCAACGATGAAGTGAAAAGTCATTTACAGAAGTATCGTTTACACACGAGAAGGCCAAGCCCAACAATCCACAACAACGACGGCGCACAACCACCGCAGTTCCTGGTGGTCGGTGGCATATGGGTACCGGCGCCGGAGTACGCCGCCATGGCAACAACGGTGGTGGCCACTTCACCACCGCCGGTCACTCAGGTACCAGCCAGTATAATCCACAGGCCAAAGCCAAAAGTATCTGGTCAGTCAAACTCCGGCAGCGGCGGCGGCGTAGGAGTAGCCGGAGCCGTTCACTGTAATTCTCCAGCTACATCTTCTTCCACTCCCATCTCTACAATTTCACATGTTTCTTAA 1125 44.71 MIFSDKMQEIATKMGFTFKDYLQTLEEEHKKVLMFQRELPLCLELVTQAIDYCKKELSMTTEEYFHGDELECSEQTSSAEIVPILEEFIPLKKNSSSILEEKKSHQNNMEKENLCQSDWLRSAQLWNQISSDPIPTHNQDLHEKTSVEETCFVEVKRNGGAFQPFQREKTVNKIGNNHEHDQSPAGGGGTSSSSTAETASAGSGGSSKREEKEKENHRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRESMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNDGAQPPQFLVVGGIWVPAPEYAAMATTVVATSPPPVTQVPASIIHRPKPKVSGQSNSGSGGGVGVAGAVHCNSPATSSSTPISTISHVS 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44411445 44413888 + evm.model.ptg000009l.380 HCH10g1250 553323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1250 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 330 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g1250 374 MobiDBLite consensus disorder prediction 356 374 - -
HCH10g1250 374 Pfam Myb-like DNA-binding domain 221 272 IPR001005 -
HCH10g1250 374 MobiDBLite consensus disorder prediction 177 205 - -
HCH10g1250 374 FunFam Myb family transcription factor 218 276 - -
HCH10g1250 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 276 IPR017930 -
HCH10g1250 374 MobiDBLite consensus disorder prediction 331 374 - -
HCH10g1250 374 MobiDBLite consensus disorder prediction 206 223 - -
HCH10g1250 374 SUPERFAMILY Homeodomain-like 217 277 IPR009057 -
HCH10g1250 374 Gene3D - 218 276 - -
HCH10g1250 374 NCBIfam myb-like DNA-binding domain, SHAQKYF class 219 274 IPR006447 GO:0003677(InterPro)
HCH10g1250 374 MobiDBLite consensus disorder prediction 175 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1250 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1250 HCH-Chr10:44411445 HCH8g0792 HCH-Chr8:44509262 3.80E-43 dispersed
HCH1g0801 HCH-Chr1:56695900 HCH10g1250 HCH-Chr10:44411445 1.20E-73 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH5g0246 . 176 377 G2-like Transcription Factor Family AT5G16560 51.2 9.4e-40 161.4
HCH4g0682 . 1 183 G2-like Transcription Factor Family AT5G42630 59.5 8.3e-46 180.6
HCH12g0669 . 12 175 G2-like Transcription Factor Family AT5G42630 60.2 1.4e-40 163.3
HCH8g0792 . 3 339 G2-like Transcription Factor Family AT2G03500 50.4 6.0e-77 285.0
HCH1g0801 . 1 259 G2-like Transcription Factor Family AT1G25550 53.7 3.3e-52 202.2
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT1G25550 54.6 8.1e-51 197.6
HCH1g0801 . 19 269 G2-like Transcription Factor Family AT3G25790 50.2 2.6e-43 172.6
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT3G25790 51.3 6.0e-40 161.4
HCH3g1389 . 1 263 G2-like Transcription Factor Family AT3G46640 52.0 5.4e-54 208.4
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT5G05090 55.6 3.6e-72 268.5
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT5G05090 55.5 3.7e-69 258.5
HCH7g1427 . 13 309 G2-like Transcription Factor Family AT4G13640 53.3 4.6e-52 201.8
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH4g0893 . 6 230 G2-like Transcription Factor Family AT1G69580 55.9 2.0e-51 199.9
HCH7g0014 . 1 385 G2-like Transcription Factor Family AT1G79430 53.4 7.2e-84 307.8
HCH2g0956 . 1 363 G2-like Transcription Factor Family AT1G79430 56.3 4.7e-83 305.1
HCH7g1427 . 38 197 G2-like Transcription Factor Family AT1G79430 61.4 2.3e-37 153.3
HCH14g0730 . 54 292 G2-like Transcription Factor Family AT2G01060 60.9 2.1e-55 212.6
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT3G10760 61.3 2.2e-90 329.3
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT3G10760 61.3 1.6e-85 313.2
HCH9g0976 . 1 201 G2-like Transcription Factor Family AT2G40970 61.6 7.8e-61 230.7
HCH9g1278 . 1 201 G2-like Transcription Factor Family AT2G40970 58.3 4.3e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32497 PF00249 Myb_DNA-binding 2.60E-06 CL0123 HCH TF