Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1250 ATGATTTTCTCCGACAAAATGCAAGAAATTGCAACCAAAATGGGTTTTACGTTTAAGGATTATTTGCAAACTCTTGAAGAAGAACACAAAAAAGTTCTCATGTTTCAACGAGAACTCCCTCTTTGTTTAGAGCTTGTAACTCAAGCTATTGATTATTGCAAGAAAGAGCTCTCAATGACGACGGAGGAATATTTTCATGGAGATGAATTAGAGTGCTCGGAGCAAACTTCAAGCGCAGAAATAGTTCCGATTTTGGAAGAATTTATTCCTCTTAAGAAAAATAGTTCTTCTATTTTAGAAGAAAAGAAATCTCATCAAAATAATATGGAGAAAGAGAATTTGTGTCAATCAGATTGGCTTCGATCTGCTCAGCTTTGGAACCAAATTTCCTCTGATCCAATTCCAACTCATAATCAAGATTTGCATGAGAAGACGTCTGTTGAAGAGACGTGTTTTGTGGAGGTGAAGAGAAATGGTGGCGCTTTTCAACCATTTCAAAGAGAGAAAACTGTGAATAAGATTGGTAATAATCATGAACATGATCAATCTCCAGCCGGCGGAGGAGGGACTTCTTCCTCGTCGACAGCGGAAACTGCCTCCGCAGGCAGCGGAGGAAGCAGTAAGAGAGAAGAGAAAGAAAAGGAGAATCATAGAAAGCAAAGACGGTGTTGGTCGCCGGAGCTACACCGACGGTTCTTACATGCTCTTCAACAACTCGGCGGTTCCCATGTGGCGACGCCTAAGCAAATTAGAGAATCTATGAAAGTTGATGGTCTCACCAACGATGAAGTGAAAAGTCATTTACAGAAGTATCGTTTACACACGAGAAGGCCAAGCCCAACAATCCACAACAACGACGGCGCACAACCACCGCAGTTCCTGGTGGTCGGTGGCATATGGGTACCGGCGCCGGAGTACGCCGCCATGGCAACAACGGTGGTGGCCACTTCACCACCGCCGGTCACTCAGGTACCAGCCAGTATAATCCACAGGCCAAAGCCAAAAGTATCTGGTCAGTCAAACTCCGGCAGCGGCGGCGGCGTAGGAGTAGCCGGAGCCGTTCACTGTAATTCTCCAGCTACATCTTCTTCCACTCCCATCTCTACAATTTCACATGTTTCTTAA 1125 44.71 MIFSDKMQEIATKMGFTFKDYLQTLEEEHKKVLMFQRELPLCLELVTQAIDYCKKELSMTTEEYFHGDELECSEQTSSAEIVPILEEFIPLKKNSSSILEEKKSHQNNMEKENLCQSDWLRSAQLWNQISSDPIPTHNQDLHEKTSVEETCFVEVKRNGGAFQPFQREKTVNKIGNNHEHDQSPAGGGGTSSSSTAETASAGSGGSSKREEKEKENHRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRESMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNDGAQPPQFLVVGGIWVPAPEYAAMATTVVATSPPPVTQVPASIIHRPKPKVSGQSNSGSGGGVGVAGAVHCNSPATSSSTPISTISHVS 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44411445 44413888 + evm.model.ptg000009l.380 HCH10g1250 553323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1250 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 330 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g1250 374 MobiDBLite consensus disorder prediction 356 374 - -
HCH10g1250 374 Pfam Myb-like DNA-binding domain 221 272 IPR001005 -
HCH10g1250 374 MobiDBLite consensus disorder prediction 177 205 - -
HCH10g1250 374 FunFam Myb family transcription factor 218 276 - -
HCH10g1250 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 276 IPR017930 -
HCH10g1250 374 MobiDBLite consensus disorder prediction 331 374 - -
HCH10g1250 374 MobiDBLite consensus disorder prediction 206 223 - -
HCH10g1250 374 SUPERFAMILY Homeodomain-like 217 277 IPR009057 -
HCH10g1250 374 Gene3D - 218 276 - -
HCH10g1250 374 NCBIfam myb-like DNA-binding domain, SHAQKYF class 219 274 IPR006447 GO:0003677(InterPro)
HCH10g1250 374 MobiDBLite consensus disorder prediction 175 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1250 HCH-Chr10:44411445 HCH8g0792 HCH-Chr8:44509262 3.80E-43 dispersed
HCH1g0801 HCH-Chr1:56695900 HCH10g1250 HCH-Chr10:44411445 1.20E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32497 PF00249 Myb_DNA-binding 2.60E-06 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1250 - - - 0.0