Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1252 ATGCAAAGCTTTGAATCTTCTTCAACAAACAACCAAGATTTCTATTCTCATTCTTCTATCTTTCTCAGAGGAGATGAAAATGGAAGAATCCATACGCGTTTTCCTGATATTGAGGAGCTTCATCAATCAGCTGCTGCTATTGCTTCTTTTCATCAACAACATGATCATATTGATTTAACTCCAAACTCAATCTTCAGCTTGAAATCAAGCCATAATCATAATAATAACAACAACGACACAGCTCTTCCTATTCACTTACCGTACACGAGTATTGGTTCATCAGATGATATAGCTCTGTCAGGAACAGGGTATTTGGATACTGGTCAGCAATACATGCATTTGAAAAGGTTGCCGGTGCCGCCTTCGGCGGTTGCGACCGTGACGGTTGCTGCGGCGGCGTTGGGAAATGTGAACTTTGAGAACTGGGGTGATTCAGCCATGGCAGATAATAGCCAACAGACTGACACTTCCACTGATATAGACACTGATGATAGAAACCAGTTCCAGGGAGCCCCACATGGAGCACTCATGGCTGTGGATTCAATGGATCAATCTAAAGCAAAATCCACTGACCAGAAGACCCTTCGTAGGCTCGCACAGAATCGAGAAGCAGCTCGGAAGAGTCGATTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAACAGTCGGCTGAGGCTTTCGCAGCTAGAGCAGGAGCTTCATCGAGCACGGCAGCAGGGCATTTTCATTGCTGGTGGGACAGGAGACCATAGTTTATCAATGGCAGGAAATGGGGCCTTGGCATTTGATTTGGACTATGCACGCTGGCTTGACGAGCATCAACGTCTAATCAATGACTTGAGAACGTCTGTGAATTCTCAGATGGGCGATGATGAATTGCGATTTCTTGTTGATGGAGTGATGACACATTACGACGAACTCTTCAGACTGAAGAGTGTAGGCGCAAAGGCTGATGTTTTCCACATCCTTTCTGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTTGGAGGATTCCGTTCATCTGAACTTCTCAAGATAGTTGGGAGCCACCTAGAGCCGTTAACAGATCAGCAGTTGATGGGTATATGCAATCTGCAGCAATCTTCTCAGCAAGCTGAAGATGCATTATCTCAAGGGATCGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCGCAGCGTCTTTGGGTCCGGCTAGTTCAGGAAATGTTGCGGATTACATGGGCCAAATGGCGATTGCGATGAGCAAGCTTGCTACATTAGAGAACTTTCTACACCAGGCTGACCTTCTGAGGCAGCAAACACTCCAACAAATGCATCGGATACTAACTACTCGTCAAGCTGCACGAGCGCTTCTTGTTATCAGCGATTATATTTCACGTCTTCGAGCTCTCAGTTCTCTATGGTTAGCACGGCCTAGAGACTGA 1437 45.93 MQSFESSSTNNQDFYSHSSIFLRGDENGRIHTRFPDIEELHQSAAAIASFHQQHDHIDLTPNSIFSLKSSHNHNNNNNDTALPIHLPYTSIGSSDDIALSGTGYLDTGQQYMHLKRLPVPPSAVATVTVAAAALGNVNFENWGDSAMADNSQQTDTSTDIDTDDRNQFQGAPHGALMAVDSMDQSKAKSTDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLSQLEQELHRARQQGIFIAGGTGDHSLSMAGNGALAFDLDYARWLDEHQRLINDLRTSVNSQMGDDELRFLVDGVMTHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSAASLGPASSGNVADYMGQMAIAMSKLATLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44442516 44445402 + evm.model.ptg000009l.382 HCH10g1252 553325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1252 478 Gene3D - 192 241 - -
HCH10g1252 478 PANTHER TRANSCRIPTION FACTOR TGA9 151 478 - -
HCH10g1252 478 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 196 211 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g1252 478 SMART brlzneu 189 242 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g1252 478 FunFam BZIP family transcription factor 192 241 - -
HCH10g1252 478 Pfam Seed dormancy control 277 350 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH10g1252 478 Coils Coil 212 239 - -
HCH10g1252 478 CDD bZIP_HBP1b-like 193 245 - -
HCH10g1252 478 ProSiteProfiles DOG1 domain profile. 259 475 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH10g1252 478 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 191 235 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g1252 478 Pfam bZIP transcription factor 193 230 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g1252 478 SUPERFAMILY Leucine zipper domain 193 235 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1252 HCH-Chr10:44442516 HCH9g1309 HCH-Chr9:41872209 9.80E-121 dispersed
HCH10g1252 HCH-Chr10:44442516 HCH4g0180 HCH-Chr4:1035219 2.30E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32498 PF14144 DOG1 5.40E-30 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1252 K14431 - csv:101210308 717.998