Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g1252 | ATGCAAAGCTTTGAATCTTCTTCAACAAACAACCAAGATTTCTATTCTCATTCTTCTATCTTTCTCAGAGGAGATGAAAATGGAAGAATCCATACGCGTTTTCCTGATATTGAGGAGCTTCATCAATCAGCTGCTGCTATTGCTTCTTTTCATCAACAACATGATCATATTGATTTAACTCCAAACTCAATCTTCAGCTTGAAATCAAGCCATAATCATAATAATAACAACAACGACACAGCTCTTCCTATTCACTTACCGTACACGAGTATTGGTTCATCAGATGATATAGCTCTGTCAGGAACAGGGTATTTGGATACTGGTCAGCAATACATGCATTTGAAAAGGTTGCCGGTGCCGCCTTCGGCGGTTGCGACCGTGACGGTTGCTGCGGCGGCGTTGGGAAATGTGAACTTTGAGAACTGGGGTGATTCAGCCATGGCAGATAATAGCCAACAGACTGACACTTCCACTGATATAGACACTGATGATAGAAACCAGTTCCAGGGAGCCCCACATGGAGCACTCATGGCTGTGGATTCAATGGATCAATCTAAAGCAAAATCCACTGACCAGAAGACCCTTCGTAGGCTCGCACAGAATCGAGAAGCAGCTCGGAAGAGTCGATTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAACAGTCGGCTGAGGCTTTCGCAGCTAGAGCAGGAGCTTCATCGAGCACGGCAGCAGGGCATTTTCATTGCTGGTGGGACAGGAGACCATAGTTTATCAATGGCAGGAAATGGGGCCTTGGCATTTGATTTGGACTATGCACGCTGGCTTGACGAGCATCAACGTCTAATCAATGACTTGAGAACGTCTGTGAATTCTCAGATGGGCGATGATGAATTGCGATTTCTTGTTGATGGAGTGATGACACATTACGACGAACTCTTCAGACTGAAGAGTGTAGGCGCAAAGGCTGATGTTTTCCACATCCTTTCTGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTTGGAGGATTCCGTTCATCTGAACTTCTCAAGATAGTTGGGAGCCACCTAGAGCCGTTAACAGATCAGCAGTTGATGGGTATATGCAATCTGCAGCAATCTTCTCAGCAAGCTGAAGATGCATTATCTCAAGGGATCGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCGCAGCGTCTTTGGGTCCGGCTAGTTCAGGAAATGTTGCGGATTACATGGGCCAAATGGCGATTGCGATGAGCAAGCTTGCTACATTAGAGAACTTTCTACACCAGGCTGACCTTCTGAGGCAGCAAACACTCCAACAAATGCATCGGATACTAACTACTCGTCAAGCTGCACGAGCGCTTCTTGTTATCAGCGATTATATTTCACGTCTTCGAGCTCTCAGTTCTCTATGGTTAGCACGGCCTAGAGACTGA | 1437 | 45.93 | MQSFESSSTNNQDFYSHSSIFLRGDENGRIHTRFPDIEELHQSAAAIASFHQQHDHIDLTPNSIFSLKSSHNHNNNNNDTALPIHLPYTSIGSSDDIALSGTGYLDTGQQYMHLKRLPVPPSAVATVTVAAAALGNVNFENWGDSAMADNSQQTDTSTDIDTDDRNQFQGAPHGALMAVDSMDQSKAKSTDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLSQLEQELHRARQQGIFIAGGTGDHSLSMAGNGALAFDLDYARWLDEHQRLINDLRTSVNSQMGDDELRFLVDGVMTHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSAASLGPASSGNVADYMGQMAIAMSKLATLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD | 478 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 44442516 | 44445402 | + | evm.model.ptg000009l.382 | HCH10g1252 | 553325 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g1252 | 478 | Gene3D | - | 192 | 241 | - | - | |
HCH10g1252 | 478 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 151 | 478 | - | - | |
HCH10g1252 | 478 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 196 | 211 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g1252 | 478 | SMART | brlzneu | 189 | 242 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g1252 | 478 | FunFam | BZIP family transcription factor | 192 | 241 | - | - | |
HCH10g1252 | 478 | Pfam | Seed dormancy control | 277 | 350 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
HCH10g1252 | 478 | Coils | Coil | 212 | 239 | - | - | |
HCH10g1252 | 478 | CDD | bZIP_HBP1b-like | 193 | 245 | - | - | |
HCH10g1252 | 478 | ProSiteProfiles | DOG1 domain profile. | 259 | 475 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
HCH10g1252 | 478 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 191 | 235 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g1252 | 478 | Pfam | bZIP transcription factor | 193 | 230 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g1252 | 478 | SUPERFAMILY | Leucine zipper domain | 193 | 235 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g1252 | HCH-Chr10:44442516 | HCH9g1309 | HCH-Chr9:41872209 | 9.80E-121 | dispersed | |
HCH10g1252 | HCH-Chr10:44442516 | HCH4g0180 | HCH-Chr4:1035219 | 2.30E-114 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32498 | PF14144 | DOG1 | 5.40E-30 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g1252 | K14431 | - | csv:101210308 | 717.998 |