Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1285 ATGAGCGGCGCTTGCGCTTCTCGGAGCACTAGAGATCCGATCTGCCACGCCGGTGCCGGTGCCGCTGCAGGTGCTATAGCAGCCACGTTCGTTTGCCCCTTAGATGTAATCAAGACCAGGCTTCAAGTGCACGGACTTCCCTCTGGTCATAGAGGTAGTATCATTATCACTAGCCTACAGGACATAATGCGTTCTGAAGGTTTCAGAGGAATGTACCGTGGTCTTTCGCCGACAATAGTAGCACTTCTTCCAAACTGGGCTGTCTACTTCACAGTTTACGAGCATTTAAAAGGCCTACTTCATTCAAATGGGGATCATGGTTGTCAACTCTCGTTTGGTGCAAATATGGTTGCTGCTGCCGGTGCTGGGGCATCTACTGCCATTGCAACAAATCCTTTGTGGGTTGTCAAGACCAGACTCCAAACACAGGGAATGAGGCCTGGTGTGGTTCCTTACGCAGGCATGGCTTCAGCATTCACCCGGATTATACAAGAAGAAGGAATACGTGGGCTTTATAGTGGTATCATTCCTTCATTGGTTGGGATAAGTCATGTTGCAATTCAATTTCCGGCATATGAAAGGCTCAAATTGTACATGGCAGAAAGAGATAACACAACCATTGAGAAGCTAAGTCCTGGACATTTAGCTATTGCCTCATCATTATCAAAAGTTATTGCCTCAGTGACTACTTATCCGCATGAGGTAGTTCGCTCCCGGCTGCAAGAGCAAGGCCAAGCCCGAAATATTGGCATTCAATACTCAGGAGTTATGGACTGTATCAAACAGGTTTTTAGAAAGGAAGGTTTACCTGGTTTTTATAGGGGCTGTGCAACAAATCTATTACGAACAACACCATCAGCTGTAATAACATTTACTAGCTATGAGATGATATATAGATTCCTGCAGCGTGTTACAGCTTCAGATGAGAATAAACATTCAGATACTCGTATTTATTCGGATGGCCATGCGAAGCCTCGGTATGAAAATAGAGACGGTTCAAGGGATGATAGTGATTCTGGGATGCAACCAAGTAAGCAAACTCAATTAACATCTAGACACTGA 1062 45.2 MSGACASRSTRDPICHAGAGAAAGAIAATFVCPLDVIKTRLQVHGLPSGHRGSIIITSLQDIMRSEGFRGMYRGLSPTIVALLPNWAVYFTVYEHLKGLLHSNGDHGCQLSFGANMVAAAGAGASTAIATNPLWVVKTRLQTQGMRPGVVPYAGMASAFTRIIQEEGIRGLYSGIIPSLVGISHVAIQFPAYERLKLYMAERDNTTIEKLSPGHLAIASSLSKVIASVTTYPHEVVRSRLQEQGQARNIGIQYSGVMDCIKQVFRKEGLPGFYRGCATNLLRTTPSAVITFTSYEMIYRFLQRVTASDENKHSDTRIYSDGHAKPRYENRDGSRDDSDSGMQPSKQTQLTSRH 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45267068 45271355 + evm.model.ptg000009l.415 HCH10g1285 553358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1285 353 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 99 IPR018108 -
HCH10g1285 353 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 300 IPR018108 -
HCH10g1285 353 MobiDBLite consensus disorder prediction 309 338 - -
HCH10g1285 353 FunFam Nicotinamide adenine dinucleotide transporter 2, mitochondrial 12 301 - -
HCH10g1285 353 Gene3D Mitochondrial carrier domain 106 317 IPR023395 -
HCH10g1285 353 Gene3D Mitochondrial carrier domain 4 105 IPR023395 -
HCH10g1285 353 PRINTS Mitochondrial carrier protein signature 219 241 IPR002067 GO:0055085(InterPro)
HCH10g1285 353 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085(InterPro)
HCH10g1285 353 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085(InterPro)
HCH10g1285 353 PRINTS Mitochondrial carrier protein signature 125 143 IPR002067 GO:0055085(InterPro)
HCH10g1285 353 PRINTS Mitochondrial carrier protein signature 172 190 IPR002067 GO:0055085(InterPro)
HCH10g1285 353 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085(InterPro)
HCH10g1285 353 MobiDBLite consensus disorder prediction 309 353 - -
HCH10g1285 353 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 8 316 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(PANTHER)|GO:0055085(InterPro)
HCH10g1285 353 SUPERFAMILY Mitochondrial carrier 11 296 IPR023395 -
HCH10g1285 353 ProSiteProfiles Solute carrier (Solcar) repeat profile. 110 198 IPR018108 -
HCH10g1285 353 MobiDBLite consensus disorder prediction 339 353 - -
HCH10g1285 353 Pfam Mitochondrial carrier protein 210 303 IPR018108 -
HCH10g1285 353 Pfam Mitochondrial carrier protein 13 102 IPR018108 -
HCH10g1285 353 Pfam Mitochondrial carrier protein 110 201 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1285 HCH-Chr10:45267068 HCH4g1046 HCH-Chr4:6743648 8.60E-114 dispersed
HCH10g1285 HCH-Chr10:45267068 HCH4g1388 HCH-Chr4:10190319 3.80E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1285 K15115 - csv:101216902 538.88