Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1291 ATGCTTGTTATGAGTTTGCATTTGCTTTTCATACTAGTTTGCTGCAGCTCTAATGGTGTAGTAAGTTCCTTAAATGATGAAGGGTTTTTGCTTTTATCATTTAAACAATCCATTAAAGAAGACCCAGAAGGGGTTTTGAGTAATTGGAATTCTTCTCATGAAACACCTTGTTCATGGAATGGAATCACATGCAAGAACGGGAGAGTTGTTTCTATTACCATTCCTAAAAAGAATCTTTTTGGCTTTCTTCCTTCTGCTCTTGGGTCTATTTCTGAGTTACATCATGTGAATTTAAGGAATAATAAACTCTATGGAGCTTTGCCTTTTCAGCTTTTTTCAGCTCAAGGGTTACAAAGTTTAGTTCTTTATGGAAATTCTTTATCTGGGTCTGTTCCAAATGGAATTGGGAAGCTTAAATTCCTTCAAATCTTGGATTTGTCACAGAATTTGTTTAATGGGTCATTGCCCAGTTCACTAATTCAATGCAAGAAACTTAAAATACTTGATGTTAGTCAGAATAGTTTCTCTGGTTTACTGCCTGATGGTTTTGGTACTAGTTTTAGTTCTTTGGAGAAATTGGATCTTTCATTTAACAAGTTTAGTGATTCTCTTCCTGGTGATTTGGGAAATTTATCTAGCTTGCAAGGAACTGTTGATTTGTCACATAATCTATTCTCTGGTTCTATCCCAGTTAGCCTTGGAAATTTACCTGAGAAAGTTTATATTGATCTTACCTATAACAATTTAAGCGGTCCGATACCCCAAAATGGTGCTCTGATGAACAGAGGACCTACTGCTTTTATTGGGAATCCAGGGCTCTGTGGACCCCCATTGAAGAACTCTTGCCCTTCAGGAACTCTAAGTGCAGCCTCACCTTCTACATTTCCTTTTATCCCGGATGAACATTCACCCGAGAATCCTGACGACAATGCTTCAACGAGTGAGAGAGCGAGGGGGTTAAGTAAGACTACTGTGATTGCTATAGTACTTAGCTATCTGATTGCCGTATGTTTAGTTGGGTTGTTGTTCTCATATTGCTATTCTAAATTGTGTACTGCTAGAAAGAGCAAAGATGAAAATGAGCATATTTCTGATAAGGGGAAGGGAAGAAAGGAGTGTTTCTGCTTCAGGAAGGATGAATCTGAGACTTTTTCGCAAAATGTGGAGCAGTATGATCTTGTGCCTTTGGATGCACAAGTTGCATTTGATCTCGATGAGCTTCTTAAGGCATCGGCATTTGTTCTTGGTAAAAGTGGAATTGGGATAGTGTACAAAGTCGTGCTTGAAGATGGAGTTACCTTGGCTGTGAGACGACTCGGTGAAGGCGGTTCTCAAAGATACAAGGAATTTCAGACAGAAGTAGAAGCGATTGGTAAGCTAAAGCATTCAAATGTTGTAACTCTTAGAGCCTATTACTGGTCTGTTGATGAGAAGCTGCTCATTTATGATTTCATCCCCAATGGAAACCTTGCCACTGCCATTCATGGAAAGCCTGAAATGGTAGCTTTCACACCGTTATCATGGTCTGCCAGGTTAAAAATCATGAAAGGAATTGCAAGAGGCATGGTCTATTTCCATGAATTTAGTCCCAAAAAATATGTCCATGGGGATTTGAAACCCAACAATATACTGCTTGATCAGAACATGGAAGCCTACATTTCTGATTTCGGCCTTGCTCGTCTGGCTAATATTGCTGGAGGAGCCACAACATTACAATCAAGTCGTATGGTGTCTGAGAAACCGCTAGATCAAAAACAACCGAAGAATGTAACATCAGAAATTATTTGCAGTTCATCTTCCAACACAGGAACTTGTTATCAGGCTCCAGAATCACTTAAAGCGTTGAAACCATCACAGAAGTGGGATGTTTACTCTTATGGTGTGATCTTACTGGAGATAATCACTGGAAGATTCCCAGTAGTCCAAGTTGGTGCTTCTGAAATGGATCTTGTTCATTGGATTCGGCACTGCATTGAAGAAAAGAAGCCTCTTTCTGATGTTTTAGATCCATATTTAGCTCAAGATGCAGATAGAGAAGAGGAAGTAATCTCAGTTTTAAAAATCGCAATGGCTTGTGTCCATGGAAGCTCCGAAAGGAGGCCTGCCATGCGACACATCTCCGACGCTCTCGAAAGGTTATCGGCATCAACGAATTGA 2157 39.78 MLVMSLHLLFILVCCSSNGVVSSLNDEGFLLLSFKQSIKEDPEGVLSNWNSSHETPCSWNGITCKNGRVVSITIPKKNLFGFLPSALGSISELHHVNLRNNKLYGALPFQLFSAQGLQSLVLYGNSLSGSVPNGIGKLKFLQILDLSQNLFNGSLPSSLIQCKKLKILDVSQNSFSGLLPDGFGTSFSSLEKLDLSFNKFSDSLPGDLGNLSSLQGTVDLSHNLFSGSIPVSLGNLPEKVYIDLTYNNLSGPIPQNGALMNRGPTAFIGNPGLCGPPLKNSCPSGTLSAASPSTFPFIPDEHSPENPDDNASTSERARGLSKTTVIAIVLSYLIAVCLVGLLFSYCYSKLCTARKSKDENEHISDKGKGRKECFCFRKDESETFSQNVEQYDLVPLDAQVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGVTLAVRRLGEGGSQRYKEFQTEVEAIGKLKHSNVVTLRAYYWSVDEKLLIYDFIPNGNLATAIHGKPEMVAFTPLSWSARLKIMKGIARGMVYFHEFSPKKYVHGDLKPNNILLDQNMEAYISDFGLARLANIAGGATTLQSSRMVSEKPLDQKQPKNVTSEIICSSSSNTGTCYQAPESLKALKPSQKWDVYSYGVILLEIITGRFPVVQVGASEMDLVHWIRHCIEEKKPLSDVLDPYLAQDADREEEVISVLKIAMACVHGSSERRPAMRHISDALERLSASTN 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45366271 45368554 + evm.model.ptg000009l.421 HCH10g1291 553364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1291 718 PANTHER OS05G0588300 PROTEIN 162 715 IPR050994 -
HCH10g1291 718 SMART serkin_6 414 683 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g1291 718 ProSiteProfiles Protein kinase domain profile. 409 693 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g1291 718 MobiDBLite consensus disorder prediction 293 316 - -
HCH10g1291 718 CDD STKc_IRAK 415 713 - -
HCH10g1291 718 Gene3D Ribonuclease Inhibitor 20 78 IPR032675 -
HCH10g1291 718 Gene3D Ribonuclease Inhibitor 79 285 IPR032675 -
HCH10g1291 718 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
HCH10g1291 718 Gene3D Phosphorylase Kinase; domain 1 377 484 - -
HCH10g1291 718 FunFam Leucine-rich repeat receptor-like protein kinase 24 181 - -
HCH10g1291 718 Pfam Leucine Rich Repeat 164 184 IPR001611 GO:0005515(InterPro)
HCH10g1291 718 Pfam Leucine Rich Repeat 218 236 IPR001611 GO:0005515(InterPro)
HCH10g1291 718 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515(InterPro)
HCH10g1291 718 Pfam Leucine Rich Repeat 141 161 IPR001611 GO:0005515(InterPro)
HCH10g1291 718 Pfam Leucine Rich Repeat 117 138 IPR001611 GO:0005515(InterPro)
HCH10g1291 718 SUPERFAMILY Protein kinase-like (PK-like) 414 710 IPR011009 -
HCH10g1291 718 FunFam Leucine-rich repeat receptor-like protein kinase 392 484 - -
HCH10g1291 718 SUPERFAMILY L domain-like 25 278 - -
HCH10g1291 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g1291 718 FunFam Leucine-rich repeat receptor-like protein kinase 189 284 - -
HCH10g1291 718 Gene3D Transferase(Phosphotransferase) domain 1 485 718 - -
HCH10g1291 718 FunFam Leucine-rich repeat protein kinase family protein 485 716 - -
HCH10g1291 718 Pfam Protein kinase domain 415 706 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1291 HCH-Chr10:45366271 HCH1g1137 HCH-Chr1:58862562 7.90E-106 dispersed
HCH13g0967 HCH-Chr13:15419322 HCH10g1291 HCH-Chr10:45366271 3.40E-135 transposed
HCH2g0010 HCH-Chr2:695399 HCH10g1291 HCH-Chr10:45366271 8.40E-87 transposed
HCH4g1857 HCH-Chr4:48540912 HCH10g1291 HCH-Chr10:45366271 5.60E-81 transposed
HCH9g1129 HCH-Chr9:14515102 HCH10g1291 HCH-Chr10:45366271 4.10E-77 transposed
HCH1g0742 HCH-Chr1:56205829 HCH10g1291 HCH-Chr10:45366271 3.60E-228 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81012 PF00069 Pkinase 6.50E-31 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1291 - - - 0.0