Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1294 ATGGGTTTGCAAAGCCAATTAGATGATTTCTCTTCTGATTCAATCCCTCTTTTCCTCATCTCTTTCTTTGCTAATTTTCTCAACCATCTCCGCTTTTTCTTCCTCCGTCTCCTCCAATCCCTCCCTCTCTCCGCCCCATTCCTCCGCCACCACCACGACGGCGCCGCCGACGGCGACACCCTTTTCCTCGCCGAACAACTTCATTTGAATTGGGTATTCTCTTACCGTTACGGTGGCGGTGTTGACGACTCCGTCGGCGGTGGCTCCGATTGCATCGTTTGCCTTTGTTCGTTATCGGACGGTGACCGTGTACGGCGGCTGAGTTGCCGCCATGTGTTTCATAAAGATTGTTTTGATGGTTGGCTTCATCATCTGAATTTCAACTGCCCTCTTTGCCGATCTCCGCTTGTTTCCGAGGAGCGCGTTCCCTTCACGCGCCGTCGTGTCGGTGAGAATCTCATTGGCTGGGTCTATATTCGATGA 483 51.97 MGLQSQLDDFSSDSIPLFLISFFANFLNHLRFFFLRLLQSLPLSAPFLRHHHDGAADGDTLFLAEQLHLNWVFSYRYGGGVDDSVGGGSDCIVCLCSLSDGDRVRRLSCRHVFHKDCFDGWLHHLNFNCPLCRSPLVSEERVPFTRRRVGENLIGWVYIR 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45425401 45425883 + evm.model.ptg000009l.424 HCH10g1294 553367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1294 160 SUPERFAMILY RING/U-box 90 138 - -
HCH10g1294 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 69 146 - GO:0016567(PANTHER)|GO:0061630(PANTHER)
HCH10g1294 160 SMART ring_2 91 132 IPR001841 -
HCH10g1294 160 Pfam Ring finger domain 90 133 IPR001841 -
HCH10g1294 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 142 IPR013083 -
HCH10g1294 160 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1294 K16282 - vvi:100262985 167.933