Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1295 ATGACGAAATTACCCCGCGCGAAAACAGCAAAAAGCGGGAAAAGAAAAGGAAATAGGTTTTCGATCAAACATTTTTCTCGATTAGTTGCAATGCACAAAGGCATCACCACAACTGCTGCTTCTAATTCAATTACTGCTACAACAACAACGACTATGTCGTCGTCGTCGTCGTCATCACATCTCAAATCTCAACTTCAATCAAACGATGTTTATACCAACTCTCTCTATAATCCCTCTATTTTCCCTTCTAATACTTCCACTTTCCCTCCCCTTCCTTCCTCTCTCTACGGAGACTCAATTTCAAATGACATTGATAATTCAACCAAAACCCTAACCAGTAATCACCACTACAATCTTCATCAAACTCGCCTTGTTCAAGACCACCAAGAGATGGTGAATCGTCATAGCCTTTACCTAACTCATCTTCGTGAAGCAACTGAAGAAGCTGATGCTCTTCGTCAAGAGAATATTCACCTGAGGACCATTAACCGGGAGCTTAATAAACATCTGAGTCTCTTGATTCATGCTTCGGTTCAGAAACAGTACGGAGTCGGAGGAGAGTCTTCTGATTTGTTGGATGGGTTTCGTGGACTGAGTGTTGGAGAGAAGGGTAATTCGTCGTGGGAAGAAGTTTCTGATGAGAGTCCGACGAGTGTTATGGATGGTGGCAGAGTTGAAGGGGTTGAAGTTGAGAGATTTTCGCTTCCGAAGAGTATTTCTGTGAGGTCTAATGGTTACTTGAAGATTGCTCAAGCTGCTGGTGGGACCACTCAAGGTGGAAAGATTCGTACCTCATCTCGTCCTAGAACTGCGAGTCCCGTCAGGGTTACGCAAAAGGTGTATGTTCAAGGAGTGAAAGAAGAGGAAAAGCCATTGGAATTGGAGGTCTACAACCAGGGAATGTTCAAGACTGAGCTTTGCAACAAATGGCAAGAAACTGGTGCTTGCCCCTATGGAGATCACTGCCAATTTGCTCATGGCATTGAGGAGCTTCGTCCGGTCATACGCCACCCCCGTTACAAGACTGAAGTTTGCAGGATGGTACTCGCCGGCGTCGTCTGTCCATACGGTCATCGTTGCCATTTCCGTCACGCGCTTACTGATCAGGAAAGGCTCATGGGGTCTCTGAAGCCATCCAGAACCGTCAAGCTTGACAGGTGA 1161 45.74 MTKLPRAKTAKSGKRKGNRFSIKHFSRLVAMHKGITTTAASNSITATTTTTMSSSSSSSHLKSQLQSNDVYTNSLYNPSIFPSNTSTFPPLPSSLYGDSISNDIDNSTKTLTSNHHYNLHQTRLVQDHQEMVNRHSLYLTHLREATEEADALRQENIHLRTINRELNKHLSLLIHASVQKQYGVGGESSDLLDGFRGLSVGEKGNSSWEEVSDESPTSVMDGGRVEGVEVERFSLPKSISVRSNGYLKIAQAAGGTTQGGKIRTSSRPRTASPVRVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGSLKPSRTVKLDR 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45436540 45439429 - evm.model.ptg000009l.425 HCH10g1295 553368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1295 386 PANTHER CCCH ZINC FINGER/TIS11-RELATED 52 367 IPR045877 GO:0003729(InterPro)
HCH10g1295 386 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872(InterPro)
HCH10g1295 386 Coils Coil 142 162 - -
HCH10g1295 386 FunFam zinc finger CCCH domain-containing protein 15-like 295 334 - -
HCH10g1295 386 ProSiteProfiles Zinc finger C3H1-type profile. 301 329 IPR000571 GO:0046872(InterPro)
HCH10g1295 386 SUPERFAMILY CCCH zinc finger 335 369 IPR036855 GO:0046872(InterPro)
HCH10g1295 386 SUPERFAMILY CCCH zinc finger 298 333 IPR036855 GO:0046872(InterPro)
HCH10g1295 386 FunFam Zinc finger protein 36, C3H1 type-like 1 335 371 - -
HCH10g1295 386 Gene3D - 335 371 - -
HCH10g1295 386 Gene3D - 295 334 - -
HCH10g1295 386 ProSiteProfiles Zinc finger C3H1-type profile. 339 367 IPR000571 GO:0046872(InterPro)
HCH10g1295 386 SMART c3hfinal6 339 366 IPR000571 GO:0046872(InterPro)
HCH10g1295 386 SMART c3hfinal6 301 328 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1295 HCH-Chr10:45436540 HCH5g0261 HCH-Chr5:1534958 1.30E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32503 PF00642 zf-CCCH 5.70E-12 CL0537 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1295 K18753 - csv:101203274 484.952