Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g1305 | ATGGCGGTTTTACCGACGAAATCATCTAGCTTGGAACTGACCATTTCCATGCCTGGATTTACTTTTTCTCCATCTCGTTCTTCATATGTGAGAAATTTGGATATAAACCAAATACCAGAAATGGAAGAAGAAGAAGAAGAATGGACGATGATGACACGAAGCATGGAAGAAGAAGATCAAGAAAGCAGCAATGGAGGTCCTCCTCGAAAGAAACTTCGTCTCTCTAAAGATCAGTCTCGTCTTCTTGAAGAAAGCTTTAGACTTAACCATACCTTAAACCCTAAGCAAAAGGAGGGTTTGGCTATGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTGTGGTTTCAGAATCGTAGAGCCAGGAGCAAGCTAAAGCAAACTGAGATGGAATGTGAATATTTGAAGAGATGGTTTGGATCATTGACGGAGCAGAACCGGAGGCTCCGGCTGGAGGTGGAGGAGCTTAGGGCTGTCAAAGTTGCTCCACCGGCCATCATATCGCCCCACGGCCGCGAGCCCCTCTTGGCATCCACCGTAACGATGTGCCCCCGATGCGAGCGGCTGACTGCTGCCACTGTCAATAAAACATCCATCATCGCCACGGCCACGGCCGCCGCAATGTCGTCTAAAGTGGCTCTGCCCGCCCTCAAATCACGGCAGCCGTCAGCGGCTTGCTGA | 678 | 49.41 | MAVLPTKSSSLELTISMPGFTFSPSRSSYVRNLDINQIPEMEEEEEEWTMMTRSMEEEDQESSNGGPPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLRLEVEELRAVKVAPPAIISPHGREPLLASTVTMCPRCERLTAATVNKTSIIATATAAAMSSKVALPALKSRQPSAAC | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 45549895 | 45552460 | + | evm.model.ptg000009l.435 | HCH10g1305 | 553378 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g1305 | 225 | Gene3D | - | 61 | 132 | - | - | |
HCH10g1305 | 225 | SMART | HOX_1 | 67 | 129 | IPR001356 | GO:0003677(InterPro) | |
HCH10g1305 | 225 | MobiDBLite | consensus disorder prediction | 41 | 73 | - | - | |
HCH10g1305 | 225 | ProSitePatterns | 'Homeobox' domain signature. | 100 | 123 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
HCH10g1305 | 225 | MobiDBLite | consensus disorder prediction | 53 | 73 | - | - | |
HCH10g1305 | 225 | Pfam | Homeobox associated leucine zipper | 125 | 157 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH10g1305 | 225 | SUPERFAMILY | Homeodomain-like | 52 | 126 | IPR009057 | - | |
HCH10g1305 | 225 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 37 | 201 | IPR050762 | - | |
HCH10g1305 | 225 | ProSiteProfiles | 'Homeobox' domain profile. | 65 | 125 | IPR001356 | GO:0003677(InterPro) | |
HCH10g1305 | 225 | Coils | Coil | 138 | 158 | - | - | |
HCH10g1305 | 225 | Pfam | Homeodomain | 69 | 123 | IPR001356 | GO:0003677(InterPro) | |
HCH10g1305 | 225 | CDD | homeodomain | 68 | 126 | IPR001356 | GO:0003677(InterPro) | |
HCH10g1305 | 225 | FunFam | Homeobox-leucine zipper protein 18 | 53 | 130 | - | - | |
HCH10g1305 | 225 | SMART | halz | 125 | 168 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g1305 | HCH-Chr10:45549895 | HCH11g0554 | HCH-Chr11:7771367 | 1.50E-34 | dispersed | |
HCH10g1305 | HCH-Chr10:45549895 | HCH14g0398 | HCH-Chr14:33013592 | 4.30E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32504 | PF00046 | Homeodomain | 1.10E-16 | CL0123 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g1305 | K09338 | - | vvi:100257750 | 287.345 |