Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1305 ATGGCGGTTTTACCGACGAAATCATCTAGCTTGGAACTGACCATTTCCATGCCTGGATTTACTTTTTCTCCATCTCGTTCTTCATATGTGAGAAATTTGGATATAAACCAAATACCAGAAATGGAAGAAGAAGAAGAAGAATGGACGATGATGACACGAAGCATGGAAGAAGAAGATCAAGAAAGCAGCAATGGAGGTCCTCCTCGAAAGAAACTTCGTCTCTCTAAAGATCAGTCTCGTCTTCTTGAAGAAAGCTTTAGACTTAACCATACCTTAAACCCTAAGCAAAAGGAGGGTTTGGCTATGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTGTGGTTTCAGAATCGTAGAGCCAGGAGCAAGCTAAAGCAAACTGAGATGGAATGTGAATATTTGAAGAGATGGTTTGGATCATTGACGGAGCAGAACCGGAGGCTCCGGCTGGAGGTGGAGGAGCTTAGGGCTGTCAAAGTTGCTCCACCGGCCATCATATCGCCCCACGGCCGCGAGCCCCTCTTGGCATCCACCGTAACGATGTGCCCCCGATGCGAGCGGCTGACTGCTGCCACTGTCAATAAAACATCCATCATCGCCACGGCCACGGCCGCCGCAATGTCGTCTAAAGTGGCTCTGCCCGCCCTCAAATCACGGCAGCCGTCAGCGGCTTGCTGA 678 49.41 MAVLPTKSSSLELTISMPGFTFSPSRSSYVRNLDINQIPEMEEEEEEWTMMTRSMEEEDQESSNGGPPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLRLEVEELRAVKVAPPAIISPHGREPLLASTVTMCPRCERLTAATVNKTSIIATATAAAMSSKVALPALKSRQPSAAC 225
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 45549895 45552460 + evm.model.ptg000009l.435 HCH10g1305 553378
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1305 225 Gene3D - 61 132 - -
HCH10g1305 225 SMART HOX_1 67 129 IPR001356 GO:0003677(InterPro)
HCH10g1305 225 MobiDBLite consensus disorder prediction 41 73 - -
HCH10g1305 225 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH10g1305 225 MobiDBLite consensus disorder prediction 53 73 - -
HCH10g1305 225 Pfam Homeobox associated leucine zipper 125 157 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH10g1305 225 SUPERFAMILY Homeodomain-like 52 126 IPR009057 -
HCH10g1305 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 37 201 IPR050762 -
HCH10g1305 225 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677(InterPro)
HCH10g1305 225 Coils Coil 138 158 - -
HCH10g1305 225 Pfam Homeodomain 69 123 IPR001356 GO:0003677(InterPro)
HCH10g1305 225 CDD homeodomain 68 126 IPR001356 GO:0003677(InterPro)
HCH10g1305 225 FunFam Homeobox-leucine zipper protein 18 53 130 - -
HCH10g1305 225 SMART halz 125 168 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1305 HCH-Chr10:45549895 HCH11g0554 HCH-Chr11:7771367 1.50E-34 dispersed
HCH10g1305 HCH-Chr10:45549895 HCH14g0398 HCH-Chr14:33013592 4.30E-34 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32504 PF00046 Homeodomain 1.10E-16 CL0123 HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1305 K09338 - vvi:100257750 287.345