Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1311 ATGACAAGTGAAATCGACGGCGACGGCGACGGCCGTCGTACTCCGGCAATTATACTTCTTGACCTAGTACGTGACTTCGTTCGAATATCAGGGAGATCGTTCTCCGGCGCCGGCGGCGGAGATGTGTTGAAACAGGATTGCGCCGATCTCATTCGTCGAATCGCGCTACTAATTCATTTAGCGGAGGAAATCAGAAACTTCAGAGGCGATAATTCCGATCATTTCAATGATTCTGGTTCTTCTTCAAGCTATGAGACTGTTACGGCGTCGTCTTCTGATTGCGTTTTGGAATTAGTTGCAGCGATTCAGGCAGCGAGGCGTCTTGTTTATCCTGCTTTGACTTTCGATCATCGAAACGAGAATTCTTATGTGACGGATGGAGCTGCCAAAAAATTGGTTTTCCAATTTCAGTATGTGACAATCAAATTGGAGTATGCATTGGCAAACCTACCATATGACCATTTTTGTATCTCAGGTGAAGTTGAAGAACAGGTTGATCTAGTTAGAGCTCAGTTGAGAAGAGCAGCTGATAAATACAAGTCTTTGGTTTCAAAATCTGAACTTCCAGACAAGAAGCTTCACGAGCAAGGATCTGGGAAATGGATGACCAACTTTGATATCAAGTACATGGGTTCTGCAAGTGATGAAGTTACAGAGAGACAGCATTTTTTTCGAAACCATAGCGATCGGATTATTCGAAATTCGGAGAAACTAAAGAATTCTGATTCATCTTCTGACTGTTGTTTAAGTGATGTTAATTCTGATTGGGAAGGTCATCTAGCCAGCATGAGACAGGATGAAAATAAGGAGTCTGATGAACTTGTGATTCCTGAAAACTTTTTATGCCCCATATCTCATGAACTGATGAGAGATCCCGTTACCGTGTCGACCGGACAGACATATGAGAGATCCAACATACAGAGATGGATAGACAGTGGAAACACTACTTGTCTGAAAACTCAACAGCAGCTCCAAGACCTGACCCTTACTTCAAACTTTCTGTTGAGACGACTGATCACTAAATGGTGTATTGAACACAATGTCGAGCCGGATGCAGTATTAACCAATGAGAAACTTAACAAGTTTGATGGATCGTTTCATGATGTTTGCAGGGGGAACTTAAGAAGTTTGGTCCGTAAGCTTTCTCACGGGTCGATCGAGAACCAGAGAACAGCCATAACCGAGATTCGAAGATTGTCCAAAAGTAGCACAGATTACAGAGAACAAATAGCTGAAGCAGGAGCAATTCCACACCTGGTAAATCTGTTAACTTCAAATGATATACCAACCCAAGAAAATGCAATATCTTCCATTCTCAACCTTTCACTGTACGAGAAGAACAAAAGTCTTATTATAGTTTCTGGAGCAATTCCTTATATTGCCAGACTCCTCAAAACTGGAAGCCTGGAAGGGAGAGAGTGTGCTGCTGCAACCATTTATAGCTTATCGTTAGTAGATGAGAATAAGGTATTAATCGGCGCTTCGGGTGTGATTCCGGATCTGTTGGAAATTCTTGAAATTGGGAGCACAAGAGGGAAGAAGGAAGCTGCAAGAGCTCTATTAAATTTGACTATCTTCCAAGGAAACAAGGACCGGGCTGTGCAGGCTGGGATAATCGTTCCGTTGCTGAAAATGCTTTCGGATTCAGACAGTTCCCTGGTTGATGAAGCTCTATATATAATGTCAGTTCTTTCAAGCCATTCAGATGGAAAAGCTGCAATGCTAAAGGCACCCTCAATTCTAGCTTTGACAGACCTTTTGAGGACTGGTTCGCCACGCAACAAAGAAAACGCAGCTGCAGTTCTTCTTGCATTGTGCAAGGGAGACCCTGATAAGCTTGTTTGGTTAAGTCGGCTTGGAGCTGTACAATCCTTGATGGAACTTGCATTGAATGGCACAGAGAGAGCCAAGCGAAAGGCGAATTCATTGTTGGAGCAGCTTCGAAAATCATCGTTGCGGTAA 1962 43.12 MTSEIDGDGDGRRTPAIILLDLVRDFVRISGRSFSGAGGGDVLKQDCADLIRRIALLIHLAEEIRNFRGDNSDHFNDSGSSSSYETVTASSSDCVLELVAAIQAARRLVYPALTFDHRNENSYVTDGAAKKLVFQFQYVTIKLEYALANLPYDHFCISGEVEEQVDLVRAQLRRAADKYKSLVSKSELPDKKLHEQGSGKWMTNFDIKYMGSASDEVTERQHFFRNHSDRIIRNSEKLKNSDSSSDCCLSDVNSDWEGHLASMRQDENKESDELVIPENFLCPISHELMRDPVTVSTGQTYERSNIQRWIDSGNTTCLKTQQQLQDLTLTSNFLLRRLITKWCIEHNVEPDAVLTNEKLNKFDGSFHDVCRGNLRSLVRKLSHGSIENQRTAITEIRRLSKSSTDYREQIAEAGAIPHLVNLLTSNDIPTQENAISSILNLSLYEKNKSLIIVSGAIPYIARLLKTGSLEGRECAAATIYSLSLVDENKVLIGASGVIPDLLEILEIGSTRGKKEAARALLNLTIFQGNKDRAVQAGIIVPLLKMLSDSDSSLVDEALYIMSVLSSHSDGKAAMLKAPSILALTDLLRTGSPRNKENAAAVLLALCKGDPDKLVWLSRLGAVQSLMELALNGTERAKRKANSLLEQLRKSSLR 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45652178 45656398 - evm.model.ptg000009l.441 HCH10g1311 553384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1311 653 SMART arm_5 526 566 IPR000225 GO:0005515(InterPro)
HCH10g1311 653 SMART arm_5 485 525 IPR000225 GO:0005515(InterPro)
HCH10g1311 653 SMART arm_5 567 607 IPR000225 GO:0005515(InterPro)
HCH10g1311 653 SMART arm_5 444 484 IPR000225 GO:0005515(InterPro)
HCH10g1311 653 SMART arm_5 403 443 IPR000225 GO:0005515(InterPro)
HCH10g1311 653 Pfam Armadillo/beta-catenin-like repeat 404 442 IPR000225 GO:0005515(InterPro)
HCH10g1311 653 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 352 IPR013083 -
HCH10g1311 653 Coils Coil 630 650 - -
HCH10g1311 653 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH10g1311 653 FunFam RING-type E3 ubiquitin transferase 363 652 - -
HCH10g1311 653 CDD RING-Ubox_PUB 277 329 IPR045210 -
HCH10g1311 653 SMART Ubox_2 279 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH10g1311 653 SUPERFAMILY RING/U-box 262 349 - -
HCH10g1311 653 PANTHER U BOX DOMAIN-CONTAINING 43 650 - -
HCH10g1311 653 Gene3D - 353 651 IPR011989 -
HCH10g1311 653 Pfam U-box domain 276 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH10g1311 653 SUPERFAMILY ARM repeat 372 647 IPR016024 -
HCH10g1311 653 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 456 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1311 HCH-Chr10:45652178 HCH2g1094 HCH-Chr2:53820840 5.50E-66 dispersed
HCH12g0116 HCH-Chr12:620814 HCH10g1311 HCH-Chr10:45652178 2.30E-14 transposed
HCH4g1791 HCH-Chr4:39604860 HCH10g1311 HCH-Chr10:45652178 5.40E-16 transposed
HCH1g0050 HCH-Chr1:4626756 HCH10g1311 HCH-Chr10:45652178 3.20E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1311 - - - 0.0