Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g1333 | ATGGAGAATTTCTTGGGACTTCTTCGAATTCGAGTGATACGTGGTGTTAATCTTGCTGTTCGTGATACTCGTAGCAGCGATCCTTATGTCGTCATCACTATGGGCACACAGACTTTGAAGACTCGTGTGGTGAAAAATAATTGCAATCCCGAATGGAACGACGAGTTGACGCTTTCGATTTCAGATCTGAAGACTCCAATCACTTTAGCGGTGTATGATAAAGATACACTAACAGACCATGACAAAATGGGAGATGTAGAGATTGACATTGCACCATACATAGAGTGTTTGAAGATGGGACTGCAGAAGCTCCCAGATGGGTGTGTGGTTAAGAGAGTGTATGAAAACAGAACAAACTGTCTAGTTGATGAGAGCCAGTGTGTTTATAACAAAGGGAAGATTGTACAGAACATGTCCCTCAGATTGAGAAATGTGGAGTGCGGCGAAGTTACGATTCAGCTCGAGTGGATCGATGTTCCTGGCGCTAAGGGTTTGCCGATCGAAGGTACGAGCCGATCGTGA | 522 | 44.44 | MENFLGLLRIRVIRGVNLAVRDTRSSDPYVVITMGTQTLKTRVVKNNCNPEWNDELTLSISDLKTPITLAVYDKDTLTDHDKMGDVEIDIAPYIECLKMGLQKLPDGCVVKRVYENRTNCLVDESQCVYNKGKIVQNMSLRLRNVECGEVTIQLEWIDVPGAKGLPIEGTSRS | 173 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 45866980 | 45868543 | + | evm.model.ptg000009l.463 | HCH10g1333 | 553406 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g1333 | 173 | CDD | C2_ArfGAP | 5 | 148 | - | - | |
| HCH10g1333 | 173 | Gene3D | C2 domain | 4 | 165 | IPR035892 | - | |
| HCH10g1333 | 173 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 158 | IPR035892 | - | |
| HCH10g1333 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - | |
| HCH10g1333 | 173 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| HCH10g1333 | 173 | ProSiteProfiles | C2 domain profile. | 1 | 106 | IPR000008 | - | |
| HCH10g1333 | 173 | Pfam | C2 domain | 6 | 92 | IPR000008 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g1333 | HCH-Chr10:45866980 | HCH3g0211 | HCH-Chr3:1352552 | 5.20E-56 | dispersed | |
| HCH1g0025 | HCH-Chr1:1745006 | HCH10g1333 | HCH-Chr10:45866980 | 5.60E-58 | wgd | |
| HCH10g1333 | HCH-Chr10:45866980 | HCH9g0420 | HCH-Chr9:2628674 | 7.10E-53 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g1333 | - | - | - | 0.0 |