Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1333 ATGGAGAATTTCTTGGGACTTCTTCGAATTCGAGTGATACGTGGTGTTAATCTTGCTGTTCGTGATACTCGTAGCAGCGATCCTTATGTCGTCATCACTATGGGCACACAGACTTTGAAGACTCGTGTGGTGAAAAATAATTGCAATCCCGAATGGAACGACGAGTTGACGCTTTCGATTTCAGATCTGAAGACTCCAATCACTTTAGCGGTGTATGATAAAGATACACTAACAGACCATGACAAAATGGGAGATGTAGAGATTGACATTGCACCATACATAGAGTGTTTGAAGATGGGACTGCAGAAGCTCCCAGATGGGTGTGTGGTTAAGAGAGTGTATGAAAACAGAACAAACTGTCTAGTTGATGAGAGCCAGTGTGTTTATAACAAAGGGAAGATTGTACAGAACATGTCCCTCAGATTGAGAAATGTGGAGTGCGGCGAAGTTACGATTCAGCTCGAGTGGATCGATGTTCCTGGCGCTAAGGGTTTGCCGATCGAAGGTACGAGCCGATCGTGA 522 44.44 MENFLGLLRIRVIRGVNLAVRDTRSSDPYVVITMGTQTLKTRVVKNNCNPEWNDELTLSISDLKTPITLAVYDKDTLTDHDKMGDVEIDIAPYIECLKMGLQKLPDGCVVKRVYENRTNCLVDESQCVYNKGKIVQNMSLRLRNVECGEVTIQLEWIDVPGAKGLPIEGTSRS 173
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 45866980 45868543 + evm.model.ptg000009l.463 HCH10g1333 553406
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1333 173 CDD C2_ArfGAP 5 148 - -
HCH10g1333 173 Gene3D C2 domain 4 165 IPR035892 -
HCH10g1333 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
HCH10g1333 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
HCH10g1333 173 SMART C2_3c 7 102 IPR000008 -
HCH10g1333 173 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
HCH10g1333 173 Pfam C2 domain 6 92 IPR000008 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1333 HCH-Chr10:45866980 HCH3g0211 HCH-Chr3:1352552 5.20E-56 dispersed
HCH1g0025 HCH-Chr1:1745006 HCH10g1333 HCH-Chr10:45866980 5.60E-58 wgd
HCH10g1333 HCH-Chr10:45866980 HCH9g0420 HCH-Chr9:2628674 7.10E-53 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1333 - - - 0.0