Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1334 ATGAAAAGAGACCATCATCATATCACTCCTCAGCCAGACCCTCCACCGTCCATGGCCGTCGGAAAATCAAAGCTTTGGGAGGAATCGGGTGAATTAGAGAGTGGCAATGGAATGGATGAGCTTTTAGCTGATTTAGGTTATAAAGTAAAAACATCAGATATGGCGGAAGTTGCTCTAAAACTTGAACAGCTTGAAGAATTCATGATGGGTCATCAAGTTCTCGATAATTATTCCATTTCCAATCTCGTATCTGAAACCGTTCATTACAATCCCTCCGATCTAGACACGTGGCTTGGATCCATGCTGACAGGATTCCACTCACTGCCGCCCCTCCCGCCTTCCACCACTTCTTCACATGTCAATCACAGTAATCACTTACCACAGAACCTCGACGGACGGGTTCTCTTCGAGGACCCGTCCCCGTCGAGTTCTGTTAATACTGCTGCAGATGTTGTTATTAGTCCTAATAATAAGCGGTTGAAATCGATACCGTCTGTAACGGGTGGTGGTTCCGCAACCCGGTCTGTTGTTCTTGTGGACTCACAGGAGAACGGAATTCAGCTCGTACATGCCTTGATGGCGTGTGCGGAAGCTGTGCAGCGGAATGATCTTAGTTTAGCGGATGCTCTCATGAAAAGGATCGGGTTTTTAGCGGGTTCTCAGGCGGGTGCCATGGGGAAGGTGGCGAAGTTTTTCGCCGAAGGGTTGGCGAGGAGGATTTATAGAATTTGTCCGGAGAATGGTATTGATCATGATTCTGTCCCGGATCTTCTTCAGATGCATTTCTATGAGAGCTGCCCGTATTTGAAATTCGCTCACTTCACGGCGAATCAAGCGATTCGGGAGGCTTTTGAAGGGAAAAAGAGCGTTCATGTTATTGATTTTTCAATAAATCAAGGGGCGCAATGGCCGGTTTTGATTCAAGCCTTGGCTTTACGGCCTGGCGGTCCTCCGGCTTTTCGATTAACCGGTGTTGGACCACCGGCGAGGGATGATTCTGATTACCTTCAAGACGTTGGTCGGAGACTATCGCAATTAGCTACAGCGATCAATGTCAAGTTTGAATATAGAGGAATTGTTGCGGGTTCGTTGGCGGAACTGGATGCGTCGATGCTCGAACTCCGTCCGAGCGATGTCGAATCCGTTGTCGTTAACTCGGTTTTCGAAGCTCACAAGCTCTTAGCCCTCCCGGGGGCGATGGAGAAGGTTTTATCAGTGGTGAAGGAGATAAAACCGGAGATTATGACGATTGTGGAGCAAGAAGCGAACCATAACGGTCCGGTTTTCGTAGACCGGTTTAACGAGTCATTGCATTATTACTCAACATTGTTCGATTCATTAGAAGGATCGGTCGACAATCAAAATAAGATGATGTCAGAGGTGTATTTAGGGAAACAAATATGTGATGTGGTGGCGTGCGAAGGACCGGACCGGGTGGAGCGGCATGAGCCTTTGAACCAGTGGCGAGAGCGGTTTTTGGCAGCCGGGTTTGAACCGGTTCACCTTGGTTCGAACGCGTATAAGCAAGCGAGTATGTTGTTGGCTTTTTTCGAGGGCGGAGATGGATATAGAGTGGTGGAGAACGACGGAGCGTTAATGTTGGGATGGCATACTCGGCCGCTCATCGCCACTTCCGCGTGGAAGCCCAACGGCCAACGAAACCATCACAATCACCACCACCACCACCACCATCACACCCCGTAG 1704 49.0 MKRDHHHITPQPDPPPSMAVGKSKLWEESGELESGNGMDELLADLGYKVKTSDMAEVALKLEQLEEFMMGHQVLDNYSISNLVSETVHYNPSDLDTWLGSMLTGFHSLPPLPPSTTSSHVNHSNHLPQNLDGRVLFEDPSPSSSVNTAADVVISPNNKRLKSIPSVTGGGSATRSVVLVDSQENGIQLVHALMACAEAVQRNDLSLADALMKRIGFLAGSQAGAMGKVAKFFAEGLARRIYRICPENGIDHDSVPDLLQMHFYESCPYLKFAHFTANQAIREAFEGKKSVHVIDFSINQGAQWPVLIQALALRPGGPPAFRLTGVGPPARDDSDYLQDVGRRLSQLATAINVKFEYRGIVAGSLAELDASMLELRPSDVESVVVNSVFEAHKLLALPGAMEKVLSVVKEIKPEIMTIVEQEANHNGPVFVDRFNESLHYYSTLFDSLEGSVDNQNKMMSEVYLGKQICDVVACEGPDRVERHEPLNQWRERFLAAGFEPVHLGSNAYKQASMLLAFFEGGDGYRVVENDGALMLGWHTRPLIATSAWKPNGQRNHHNHHHHHHHHTP 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45879793 45881496 - evm.model.ptg000009l.464 HCH10g1334 553407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1334 567 MobiDBLite consensus disorder prediction 552 567 - -
HCH10g1334 567 Pfam GRAS domain family 188 548 IPR005202 -
HCH10g1334 567 Gene3D - 37 105 IPR038088 -
HCH10g1334 567 ProSiteProfiles GRAS family profile. 179 548 IPR005202 -
HCH10g1334 567 SMART DELLA_2 39 115 - -
HCH10g1334 567 MobiDBLite consensus disorder prediction 1 22 - -
HCH10g1334 567 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 165 547 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
HCH10g1334 567 MobiDBLite consensus disorder prediction 547 567 - -
HCH10g1334 567 Pfam Transcriptional regulator DELLA protein N terminal 39 107 IPR021914 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1334 HCH-Chr10:45879793 HCH8g0794 HCH-Chr8:44538125 2.50E-115 dispersed
HCH13g1280 HCH-Chr13:40767643 HCH10g1334 HCH-Chr10:45879793 1.40E-25 transposed
HCH14g0149 HCH-Chr14:24901855 HCH10g1334 HCH-Chr10:45879793 2.00E-31 transposed
HCH1g0652 HCH-Chr1:55453184 HCH10g1334 HCH-Chr10:45879793 8.90E-58 transposed
HCH8g0416 HCH-Chr8:37985110 HCH10g1334 HCH-Chr10:45879793 1.70E-53 transposed
HCH6g0938 HCH-Chr6:44180497 HCH10g1334 HCH-Chr10:45879793 1.80E-56 transposed
HCH10g1334 HCH-Chr10:45879793 HCH9g0424 HCH-Chr9:2657757 3.30E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32505 PF03514 GRAS 1.60E-128 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1334 K14494 - csv:101204164 733.791