Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1341 ATGAAAATACTATATCATCATCATCAATATTATTTTCTCCTCCTCCTCCTCCTTCCATTAATGGTAAAGAATGGAAGCTCCAAGATCATATCTTGCAGCCAAACCCCATATCCAGAAACATGCTTCCATTATTTCATGAACAAAGAGTATGAATTAGCAAGCTCTCATGAAACTAATGATCAAATATTCACTCAGTTTCATGACTTAGCCATTCATGTCACGTTGACTCAAGCCATTCTTGCTCACGACCACCTCGTATCAGCCATGAATTTGACTTTGTTTGATGATGATAGAGCTAAGTTAGCTTGGGTTGACTGTTTGGAGCTGTACGAGGATTCAGTTGACCAACTCAACAAGTCAATATTCAGCTCCTTTTTCAACCCTTCTGACCATTTAACTCGTTTAAGTGCTTCAATTTTCAATCATCAAACATGTCAAAATGGTTTTCATGATTTAGGGTTATCTTCTCATCATTTCCATGAATTTCCATTCCAAATTCTCAGTAACTTCTCTAAGTTGGTAAGCAATTCTCTTGCCATCACCAAGGCTTCCTCCACCGCAGTCGGGGGCAGGCGGTTGCTCTCGATGTCCGAGTCGTTTCCCGAGTGGTTCACCGATGATGATAGAGCACTTCTCGGAGGAACATCGGCCGGTTTCGGACCAAGAAAGGTAGATATGGTGATTGCTCAAGATGGAACAGGGCATTATAGGACCATATCTGAGGCTGTGGAAGCATTAGGGAAGATTAGGAAGGGAAGTAAAAGGTTTGTTATATATGTAAAAAGTGGTGTTTATAGAGAAAATGTTGTGATTGAGAAGAAGATGAAGAATATAATGGTAATTGGAGATGGGATTGATTCCACCATTGTCACTGCCAGGAAGAATGTCCAAGATGGATCAACCACCTTTCGATCTGCCACTTTTGCGGTGTCCGGTGATGGATTCATCGCCAGAGACATAACGTTTGAAAACACGGCGGGGCCACATAAACACCAAGCTGTTGCACTCCGATCAAGCGCCGATCACTCAGTTTTCTATCGATGTAGCTTCAAAGGCTACCAAGACACTCTCTACGCCCACTCCAAGCGTCAATTCTACCGCGAATCCAATATCTACGGAACCGTCGATTTCATATTCGGCGATGCCATTGCCGTCTTTCAAAACTGTAAGATCTTCGTTAGAAAACCGATGAGAAACCAAAAAAACACCATCACTGCTCAGGCAAGATCCGACCCAAATGAGAACACCGGATTCGTTATCCAGAATTCGGTCATCATAGCTGCACCGAACTTGAAACCGGTGGAGAGATTGTACGAAAGTTATCTCGGAAGGCCATGGAAGGCATATTCAAGGACGGTAATAATGAAATGTTTTTTGGATGGGTTAATAGCTCCGGCGGGATGGCTTCCATGGGATGGAAAATTTGGTCTGAAAACGCTATACTACGGCGAGTTCATGAACACCGGCGGCGGCGCAAATACAAGTGGAAGGGTAAGATGGCCAGGGTATCATGTGATGACGAGTGTGGTGGAGGCCAGAAGATTTACTATCAACAATTTCTTGGAGGGGGAAAGTTGGATTCCGACCACCGAAGTGCCGTTTGCAGATGGTTTATGA 1617 43.66 MKILYHHHQYYFLLLLLLPLMVKNGSSKIISCSQTPYPETCFHYFMNKEYELASSHETNDQIFTQFHDLAIHVTLTQAILAHDHLVSAMNLTLFDDDRAKLAWVDCLELYEDSVDQLNKSIFSSFFNPSDHLTRLSASIFNHQTCQNGFHDLGLSSHHFHEFPFQILSNFSKLVSNSLAITKASSTAVGGRRLLSMSESFPEWFTDDDRALLGGTSAGFGPRKVDMVIAQDGTGHYRTISEAVEALGKIRKGSKRFVIYVKSGVYRENVVIEKKMKNIMVIGDGIDSTIVTARKNVQDGSTTFRSATFAVSGDGFIARDITFENTAGPHKHQAVALRSSADHSVFYRCSFKGYQDTLYAHSKRQFYRESNIYGTVDFIFGDAIAVFQNCKIFVRKPMRNQKNTITAQARSDPNENTGFVIQNSVIIAAPNLKPVERLYESYLGRPWKAYSRTVIMKCFLDGLIAPAGWLPWDGKFGLKTLYYGEFMNTGGGANTSGRVRWPGYHVMTSVVEARRFTINNFLEGESWIPTTEVPFADGL 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45972961 45975129 - evm.model.ptg000009l.471 HCH10g1341 553414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1341 538 PANTHER PECTINESTERASE 14 529 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH10g1341 538 SMART PMEI_2 25 180 IPR006501 GO:0004857(InterPro)
HCH10g1341 538 Pfam Plant invertase/pectin methylesterase inhibitor 31 180 IPR006501 GO:0004857(InterPro)
HCH10g1341 538 ProSitePatterns Pectinesterase signature 1. 252 271 IPR018040 -
HCH10g1341 538 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
HCH10g1341 538 SUPERFAMILY Pectin lyase-like 223 536 IPR011050 -
HCH10g1341 538 CDD PMEI-like_3 31 183 - -
HCH10g1341 538 Pfam Pectinesterase 225 523 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH10g1341 538 Gene3D - 222 538 IPR012334 -
HCH10g1341 538 FunFam Pectinesterase 221 538 - -
HCH10g1341 538 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 182 IPR035513 -
HCH10g1341 538 NCBIfam pectinesterase inhibitor domain 7 182 IPR006501 GO:0004857(InterPro)
HCH10g1341 538 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 183 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1341 HCH-Chr10:45972961 HCH5g0736 HCH-Chr5:5353497 2.10E-135 dispersed
HCH10g1341 HCH-Chr10:45972961 HCH11g1124 HCH-Chr11:42991513 8.40E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1341 - - - 0.0