Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1352 ATGGATGATATGAAAGACAAATTTAAGGGTTTCATGAAAAGGGTTAATAATTCATCTTCTTCAAGCTTTAAAGGTCAAGGTAGAGTTTTAGGATCTTCTTCATCAGGACCCACCAATCCTTTGCCTGCTTGCCCATCAAATAATCCTATTTCAGTTCCTCCTAAAAATTCTAAGCCTTTGATTTCTAATTCAATTGGTACTGGTCAGAATAGGTCAGAATTGTCTAAAAAATCCAACCCGGATCGCAAACCGGCTGATGGGTTTGATCCATTCGGTTCATTTATCACTTCTGGGAAAAAAGTGGGCAACGGGTATTCTTTGAATATGTTTGAATGTCCTATTTGTGGCCGGAGTTATAATTCTGAAGAGGAAGTTTCGGTGCATGTAGATAGCTGTGTTGATAATTCAGCTAAGAGAGTAGAAGAAGTGTCGGTCGATGATGTCGAATCTCGTAGTGAATTGGAGGCTTGTGTTGGTATTTATGTATCGGGGAAGCCGTCACAAGGTTCATTGGAAATCGTTTTGAAGCTTTTGAGGAATATAGTTCGGGAACCGGAGAATGCAAAGTTTAGGAAGATTCGTATGAGTAATCCGAAAATTAAGGAGACCATTGGTGAGGTTGTGGGGGGAGTGGAGTTGTTGGAGTTTGTGGGTTTTAAATTGAAAGAGGAAGATGGTGAAATGTGGGCGGTTATGGAAGTTCCAACAGAAGAAAAAATCAATACATTGCGTAAGGTAATAGATTTTATTGAACCGCCAAAGCTTGAAGAACAGCAAAGAAAAGGCAACACCACATCTTCAAATTCAACTGAGGTTGATCAGACGATTGAACCAAAGAAGGTCGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAGTGTAGCTGCAAGAATCGAGCTACCAGAATCCTTCTACAATCTCTCTATTGAAGAGGTAAAAAGAGAAGCTATTATGAGGAAGCAAAAGATGGCTGAATCTCAGCTTTTGATTCCCAAATCTTTGAAGGAGAAACAGGCAAAAGCTTCTAGGAGAAAATACAAAAGAACGGTTATCAGGATTCAGTTTCCTGATGGAGTGGTACTTCAAGGTGTTTTTGCTCCATGGGAATCAACAACTGCTCTATATGAGTTCGTGAGCATGGCGCTGAAAGAACCCAGTTTGGAATTTGAGTTAATATATCCGGTCGGGGTCAAACGCCGCGTGATCACTCATTTTCCTGCACAAGGAGAGAAGGTTACACTAGACGATGAGGAATTAGTCCCCTCGGCTCTGATCAAGTTTAGACCCATTGAAACAGATTCAGTTGTCTTCACAGGGTTGTGTAATGAACTCCTTGAGACTATTGAACCGCTTGTAAGCGGTTCGGCTGTGGCTCCTACCACACAAGTTTAA 1395 41.22 MDDMKDKFKGFMKRVNNSSSSSFKGQGRVLGSSSSGPTNPLPACPSNNPISVPPKNSKPLISNSIGTGQNRSELSKKSNPDRKPADGFDPFGSFITSGKKVGNGYSLNMFECPICGRSYNSEEEVSVHVDSCVDNSAKRVEEVSVDDVESRSELEACVGIYVSGKPSQGSLEIVLKLLRNIVREPENAKFRKIRMSNPKIKETIGEVVGGVELLEFVGFKLKEEDGEMWAVMEVPTEEKINTLRKVIDFIEPPKLEEQQRKGNTTSSNSTEVDQTIEPKKVDRQIRVFFAVPESVAARIELPESFYNLSIEEVKREAIMRKQKMAESQLLIPKSLKEKQAKASRRKYKRTVIRIQFPDGVVLQGVFAPWESTTALYEFVSMALKEPSLEFELIYPVGVKRRVITHFPAQGEKVTLDDEELVPSALIKFRPIETDSVVFTGLCNELLETIEPLVSGSAVAPTTQV 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46058276 46061371 - evm.model.ptg000009l.482 HCH10g1352 553425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1352 464 MobiDBLite consensus disorder prediction 1 90 - -
HCH10g1352 464 MobiDBLite consensus disorder prediction 254 274 - -
HCH10g1352 464 Gene3D - 339 430 - -
HCH10g1352 464 FunFam UBX domain-containing protein 6 339 429 - -
HCH10g1352 464 SMART PGNneu 169 236 - -
HCH10g1352 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 139 IPR013087 -
HCH10g1352 464 SMART c2hc_5 109 133 IPR006642 GO:0003677(InterPro)|GO:0006281(InterPro)
HCH10g1352 464 Pfam PUB domain 168 244 IPR018997 -
HCH10g1352 464 ProSiteProfiles UBX domain profile. 345 428 IPR001012 GO:0005515(InterPro)
HCH10g1352 464 SUPERFAMILY PUG domain-like 165 252 IPR036339 -
HCH10g1352 464 CDD UBX_UBXN6 350 429 - -
HCH10g1352 464 MobiDBLite consensus disorder prediction 50 74 - -
HCH10g1352 464 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 455 - GO:0050832(PANTHER)
HCH10g1352 464 MobiDBLite consensus disorder prediction 13 41 - -
HCH10g1352 464 Gene3D - 163 252 - -
HCH10g1352 464 CDD PUB 163 251 - -
HCH10g1352 464 MobiDBLite consensus disorder prediction 259 274 - -
HCH10g1352 464 Pfam UBX domain 346 424 IPR001012 GO:0005515(InterPro)
HCH10g1352 464 SUPERFAMILY Ubiquitin-like 316 428 IPR029071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1352 HCH-Chr10:46058276 HCH6g1409 HCH-Chr6:47927966 3.50E-06 dispersed
HCH10g1352 HCH-Chr10:46058276 HCH5g0194 HCH-Chr5:1086086 3.20E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32506 PF00789 UBX 5.10E-05 CL0072 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1352 K14011 - csv:101209321 692.575