Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g1352 | ATGGATGATATGAAAGACAAATTTAAGGGTTTCATGAAAAGGGTTAATAATTCATCTTCTTCAAGCTTTAAAGGTCAAGGTAGAGTTTTAGGATCTTCTTCATCAGGACCCACCAATCCTTTGCCTGCTTGCCCATCAAATAATCCTATTTCAGTTCCTCCTAAAAATTCTAAGCCTTTGATTTCTAATTCAATTGGTACTGGTCAGAATAGGTCAGAATTGTCTAAAAAATCCAACCCGGATCGCAAACCGGCTGATGGGTTTGATCCATTCGGTTCATTTATCACTTCTGGGAAAAAAGTGGGCAACGGGTATTCTTTGAATATGTTTGAATGTCCTATTTGTGGCCGGAGTTATAATTCTGAAGAGGAAGTTTCGGTGCATGTAGATAGCTGTGTTGATAATTCAGCTAAGAGAGTAGAAGAAGTGTCGGTCGATGATGTCGAATCTCGTAGTGAATTGGAGGCTTGTGTTGGTATTTATGTATCGGGGAAGCCGTCACAAGGTTCATTGGAAATCGTTTTGAAGCTTTTGAGGAATATAGTTCGGGAACCGGAGAATGCAAAGTTTAGGAAGATTCGTATGAGTAATCCGAAAATTAAGGAGACCATTGGTGAGGTTGTGGGGGGAGTGGAGTTGTTGGAGTTTGTGGGTTTTAAATTGAAAGAGGAAGATGGTGAAATGTGGGCGGTTATGGAAGTTCCAACAGAAGAAAAAATCAATACATTGCGTAAGGTAATAGATTTTATTGAACCGCCAAAGCTTGAAGAACAGCAAAGAAAAGGCAACACCACATCTTCAAATTCAACTGAGGTTGATCAGACGATTGAACCAAAGAAGGTCGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAGTGTAGCTGCAAGAATCGAGCTACCAGAATCCTTCTACAATCTCTCTATTGAAGAGGTAAAAAGAGAAGCTATTATGAGGAAGCAAAAGATGGCTGAATCTCAGCTTTTGATTCCCAAATCTTTGAAGGAGAAACAGGCAAAAGCTTCTAGGAGAAAATACAAAAGAACGGTTATCAGGATTCAGTTTCCTGATGGAGTGGTACTTCAAGGTGTTTTTGCTCCATGGGAATCAACAACTGCTCTATATGAGTTCGTGAGCATGGCGCTGAAAGAACCCAGTTTGGAATTTGAGTTAATATATCCGGTCGGGGTCAAACGCCGCGTGATCACTCATTTTCCTGCACAAGGAGAGAAGGTTACACTAGACGATGAGGAATTAGTCCCCTCGGCTCTGATCAAGTTTAGACCCATTGAAACAGATTCAGTTGTCTTCACAGGGTTGTGTAATGAACTCCTTGAGACTATTGAACCGCTTGTAAGCGGTTCGGCTGTGGCTCCTACCACACAAGTTTAA | 1395 | 41.22 | MDDMKDKFKGFMKRVNNSSSSSFKGQGRVLGSSSSGPTNPLPACPSNNPISVPPKNSKPLISNSIGTGQNRSELSKKSNPDRKPADGFDPFGSFITSGKKVGNGYSLNMFECPICGRSYNSEEEVSVHVDSCVDNSAKRVEEVSVDDVESRSELEACVGIYVSGKPSQGSLEIVLKLLRNIVREPENAKFRKIRMSNPKIKETIGEVVGGVELLEFVGFKLKEEDGEMWAVMEVPTEEKINTLRKVIDFIEPPKLEEQQRKGNTTSSNSTEVDQTIEPKKVDRQIRVFFAVPESVAARIELPESFYNLSIEEVKREAIMRKQKMAESQLLIPKSLKEKQAKASRRKYKRTVIRIQFPDGVVLQGVFAPWESTTALYEFVSMALKEPSLEFELIYPVGVKRRVITHFPAQGEKVTLDDEELVPSALIKFRPIETDSVVFTGLCNELLETIEPLVSGSAVAPTTQV | 464 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 46058276 | 46061371 | - | evm.model.ptg000009l.482 | HCH10g1352 | 553425 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g1352 | 464 | MobiDBLite | consensus disorder prediction | 1 | 90 | - | - | |
HCH10g1352 | 464 | MobiDBLite | consensus disorder prediction | 254 | 274 | - | - | |
HCH10g1352 | 464 | Gene3D | - | 339 | 430 | - | - | |
HCH10g1352 | 464 | FunFam | UBX domain-containing protein 6 | 339 | 429 | - | - | |
HCH10g1352 | 464 | SMART | PGNneu | 169 | 236 | - | - | |
HCH10g1352 | 464 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 110 | 139 | IPR013087 | - | |
HCH10g1352 | 464 | SMART | c2hc_5 | 109 | 133 | IPR006642 | GO:0003677(InterPro)|GO:0006281(InterPro) | |
HCH10g1352 | 464 | Pfam | PUB domain | 168 | 244 | IPR018997 | - | |
HCH10g1352 | 464 | ProSiteProfiles | UBX domain profile. | 345 | 428 | IPR001012 | GO:0005515(InterPro) | |
HCH10g1352 | 464 | SUPERFAMILY | PUG domain-like | 165 | 252 | IPR036339 | - | |
HCH10g1352 | 464 | CDD | UBX_UBXN6 | 350 | 429 | - | - | |
HCH10g1352 | 464 | MobiDBLite | consensus disorder prediction | 50 | 74 | - | - | |
HCH10g1352 | 464 | PANTHER | PLANT UBX DOMAIN-CONTAINING PROTEIN 2 | 1 | 455 | - | GO:0050832(PANTHER) | |
HCH10g1352 | 464 | MobiDBLite | consensus disorder prediction | 13 | 41 | - | - | |
HCH10g1352 | 464 | Gene3D | - | 163 | 252 | - | - | |
HCH10g1352 | 464 | CDD | PUB | 163 | 251 | - | - | |
HCH10g1352 | 464 | MobiDBLite | consensus disorder prediction | 259 | 274 | - | - | |
HCH10g1352 | 464 | Pfam | UBX domain | 346 | 424 | IPR001012 | GO:0005515(InterPro) | |
HCH10g1352 | 464 | SUPERFAMILY | Ubiquitin-like | 316 | 428 | IPR029071 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g1352 | HCH-Chr10:46058276 | HCH6g1409 | HCH-Chr6:47927966 | 3.50E-06 | dispersed | |
HCH10g1352 | HCH-Chr10:46058276 | HCH5g0194 | HCH-Chr5:1086086 | 3.20E-07 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32506 | PF00789 | UBX | 5.10E-05 | CL0072 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g1352 | K14011 | - | csv:101209321 | 692.575 |