Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1364 ATGTCATCACCTTCATTTCCTCCTTCCAATGACCAATCCTTCCCTCTCCTACGCTCCAACTCCACCACCTCCACCCCACTCGCCCTCTTATTGGGCCACGTCACAGGAGAACGGCGCTCGTCCATGGTTGTCCGAGAAACAGCAGCGCGTGAGCTCGCTGAACGGCGCGTGGACTGGGGGTATTCGAAGCCAGTGGTGGCAGTTGACATTTTATGGAATGCGTGTTTCATTATTGCTGCAATTGTTATGCTTATTCGGTCTGGGAATGAAAAACCGAACTCGCCGATACGGGTTTGGATTATTGTCTACGCGGGACAGTGCTTGGTTCATGCTGTGATTGTGTTGTTAGAATTTAGGAGGAGGAGCGTGAGGCAGGAACGTGTGGAGATTGATGGAAATGTTGTTAATGAGAGTGATGATGAAGATGGTGAAATGATGAGTCAGTCTATTATTTCGAAACGATGGGATACCGTGAACACAATGGTGACATTTATCTGGTGGATACTTGGATTTTACTGGATTCTTTCTGGTGGTGACATCCTCTTGAAGAATGCTCCAAATTTGTACTGGCTGGCTGTTGCTTTTCTGGCATTTGATGTGTTCTTTGCCATCTTTTGTGTTCTTTTGGCATGTTTGATTGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATTACTATTCTTTACACTGTTGCAGGCCAGGAAGGTGCATCAGATGCAGATTTAAGTATGCTTCCTAAGTATAGATATCGAGTTTTAAACGAGCCTTCCACGGGAGCTGGATTGATGGTTCCAGTAGAAACAAACAGCAGATATTTGACAACTGAACGGGTGCTTTTGCCCGAGGATGCGGAGTGCTGTATATGTCTCAGTCAATATGAGGATGGAGTGGAGCTTCATGCTCTTCCCTGCAATCACCATTTCCACTATGAATGTATCACGAAATGGCTCAAGATGAATGCAACATGTCCTTTGTGCAAGTACCACATTCTTAAAGGAAATGAACCAGTATAA 1014 45.36 MSSPSFPPSNDQSFPLLRSNSTTSTPLALLLGHVTGERRSSMVVRETAARELAERRVDWGYSKPVVAVDILWNACFIIAAIVMLIRSGNEKPNSPIRVWIIVYAGQCLVHAVIVLLEFRRRSVRQERVEIDGNVVNESDDEDGEMMSQSIISKRWDTVNTMVTFIWWILGFYWILSGGDILLKNAPNLYWLAVAFLAFDVFFAIFCVLLACLIGIALCCCLPCIITILYTVAGQEGASDADLSMLPKYRYRVLNEPSTGAGLMVPVETNSRYLTTERVLLPEDAECCICLSQYEDGVELHALPCNHHFHYECITKWLKMNATCPLCKYHILKGNEPV 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46191988 46194644 - evm.model.ptg000009l.494 HCH10g1364 553437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1364 337 ProSiteProfiles Zinc finger RING-type profile. 286 327 IPR001841 -
HCH10g1364 337 Pfam Ring finger domain 285 327 IPR001841 -
HCH10g1364 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 331 IPR013083 -
HCH10g1364 337 SUPERFAMILY RING/U-box 272 331 - -
HCH10g1364 337 CDD RING-H2_PA-TM-RING 285 327 - -
HCH10g1364 337 PANTHER TARGET OF ERK KINASE MPK-1 27 330 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
HCH10g1364 337 SMART ring_2 286 326 IPR001841 -
HCH10g1364 337 FunFam E3 ubiquitin protein ligase RIE1 266 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1364 HCH-Chr10:46191988 HCH7g1595 HCH-Chr7:48251277 6.30E-82 dispersed
HCH10g1364 HCH-Chr10:46191988 HCH9g1235 HCH-Chr9:32208277 4.10E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1364 - - - 0.0