Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1380 ATGCAGCAGCAAAGCCAAAACAACAACAATTCTGTGGCCATGATGTCGAATGAGCAAATGGGAACGAAGAAAGGTTATACATTTGTTCAGGCAAACAGGGCTTGGCTTTTTAAGTCTCTTTTGCTTTGGATTATGGGGATGGCAATTATCAGCAGGTTTATATATAAAAGCATGGATGATGATAACAAAGAGAGGAGGAATGAAGTTTTGGAAAGTATGTGTGAGCAGAGGGCAAGGATGTTGCAGGATCAATTTAGTGTTAGTGTTAACCATGTTCATGCTTTGGCTGTCCTCGTGTCTACCTTTCATTACTTCAAGAACCCTTCCGCTATCGATCAGGAAACTTTTGCAGAATATACAGCTAGAACTGCTTTCGAACGGCCTCTACTCAGTGGTGTGGCATATGCACAAAGAGTGATTGATTTCGAGAGGGAACAATTTGAGAAGCAACATGGGTGGATGATTAAAACAATGGAAAGAGAACCTTCACCTGTCCGAGATGAATATGCACCAGTAATATTTTCTCAAGAAACAGTCTCCTATATTGAATCATTGGATATGATGTCAGGAGAGGAGGACCGCGAAAATATTTTGAGGGCCAGAGCAACAGGAAAGGCTGTTTTAACCAGTCCCTTCAGGTTGCTGGGTTCTCATCATCTTGGAGTTGTTTTGACGTTTCCTGTTTACAAAGCCAAACTGCCATCAAAACCAACTGAAGATGACCGCATACGAGCAACAGCAGGCTATGTTGGTGGAGCCTTTGATGTCGAGTCCCTCGTGGAGAACTTGCTAGGGCAGCTTGCAGGGAACCAGGCCATTTTGGTAAATGTATATGATGTCACGGACCCTTCTAATCCTCTTGTCATGTATGGTCATCAATATCAAGATGCCGATCTGTCTCTTTTGCATGAGAGCAAACTTGATTTTGGAGATCCATTCAGGAAGCATCTGATGGTTTGTAGATATCAGCAAAAGGCTCCCACGTCCTGGACTGCCCTAACTACTGCATTCTTATTCTTCGTGATTGGGTTATTAGTCGGCTATATTTTGTATGGTGCAGCAACTCACATTGTGAAGGTTGAAGACGATTTCCATGAGATGCAAGAACTAAAAGTTCGAGCAGAAGCTGCTGATGTAGCAAAATCCCAGTTTCTTGCAACCGTTTCTCATGAAATTAGGACACCAATGAACGGCATCCTCGGAATGCTGGCTTTGCTTCTGGATACAGATTTAAGTTCAACTCAGAAGGATTATGCTCAGACTGCCCAGGCTTGTGGAAAAGCACTGATAGCATTAATAAATGAGGTTCTTGATAGGGCAAAAATTGAAGCTGGCAGATTAGAACTGGAAGCAGTTCCGTTTGACATTCGATCAATATTAGATGATGTCCTATCTTTATTTTCTGAGAAATCTAGACAAAAGGGCCTAGAGCTGGCAGTTTTTGTTTCTGACAAAGTTCCAGAAACTGTAATAGGAGATCCCGGAAGATTCAGACAGATCATAACAAATCTTGTGTCTAACTCTGTTAAATTTACTGAAAGGGGACATATATTTGTTAATGTACACCTAGCTGAACACTCAAAAGCATCCATTGACTCAAAGTATGTTAATGGAACGTCAGACACGGACTTGTTCATATTGGATGGCCATGAATTTAAAACTTTAAGTGGAAGTGAGGCAGCTGATGATCAGAACAGTTGGGATAACTTTAAACGTCTAATTGCTGACGAGAACTTTCAATTTAATGCTTCAAATAACATGACAGTCACTGACAAACATAATGATCACGTTACTTTGATGGTAAGTGTGGAGGATACTGGAATAGGGATTCCTTTACATGCCCAAACTCGAGTTTTCATGCCATTCATGCAAGCAGATAGCTCAACGTCTAGAAACTACGGAGGAACCGGTATCGGCTTAAGCATCAGCAAATGCTTAGTTGAACTAATGGGTGGTCAGATAAGCTTCAAAAGTCGGCCTCAGATCGGGAGCACATTTTCGTTCACTGCTGTTTTGGGGAGATGCAAGAAGAATCCAATCAATGACATGAAAAAACCCAGATCTGAAGAACTCCCTCCCAATTTTAGAGGAATAAAAGCAATAGTAGTTGACTGGAATCCCGTTAGAGCTTCTGTAACCAGATATCATTTAAAGAGACTTGGTATTATAGTTGAAGTCACCAGTAGCATCACTTTGGCAGCTTCTTTATTCAGAGAAAATGGTTCCACAGTTTCAGGAAATACAATCCTGCCAGATATGATTTTAGTTGAAAAGGATATATTGACTTCAAGCGACGATTGTGTTATTATTCATCCACTGACTTGGAAGCAGAATGGGAGTACATTTAAGTTACCAAAAATGGTCCTTCTTGCTACATATATTACCACTGCAGAATTTGATAAAGCAAGGGCAGCAGGTTTTGCAGACACAGTGATCATGAAACCATTACGGGCGAGTATGGTCGCTGCGTGTCTTCAACAAGTGCTCGGAGTTAAGAATCAGAGTCGGGGAAAAGGCCTACCAAATGGTTCTTACCTCCAGAGTCTTCTTTGTGGCAAGAGGATTTTAATTGTTGATGATAACAGAGTAAACCGCAGGGTTGCTGCCGGTGCTCTGAAGAAATTCGGTGCTGATGTTGAGTGTGCCGATAGTGGGAAAGCTGCCCTGAATTTGCTTCAACTACCCCACGGTTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCAACCCGTCGTATCAGAGTGATGGAGAGTAAGGCAAATGAGCAAATGAATGGAGGATCTGAAGAATGCAAGTGGCATATGCCGATATTAGCGATGACAGCAGATGTGATTCACGCCACGCACGAGGAGTGCCTGAAATGTGGAATGGATGGCTATGTCTCAAAACCGTTTGAGGAAGAAAATCTATACAAGGAAGTTGCCAAGTTTTTCAAATCATAG 2961 41.84 MQQQSQNNNNSVAMMSNEQMGTKKGYTFVQANRAWLFKSLLLWIMGMAIISRFIYKSMDDDNKERRNEVLESMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIDFEREQFEKQHGWMIKTMEREPSPVRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKAKLPSKPTEDDRIRATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTDPSNPLVMYGHQYQDADLSLLHESKLDFGDPFRKHLMVCRYQQKAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGRLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPETVIGDPGRFRQIITNLVSNSVKFTERGHIFVNVHLAEHSKASIDSKYVNGTSDTDLFILDGHEFKTLSGSEAADDQNSWDNFKRLIADENFQFNASNNMTVTDKHNDHVTLMVSVEDTGIGIPLHAQTRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQISFKSRPQIGSTFSFTAVLGRCKKNPINDMKKPRSEELPPNFRGIKAIVVDWNPVRASVTRYHLKRLGIIVEVTSSITLAASLFRENGSTVSGNTILPDMILVEKDILTSSDDCVIIHPLTWKQNGSTFKLPKMVLLATYITTAEFDKARAAGFADTVIMKPLRASMVAACLQQVLGVKNQSRGKGLPNGSYLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALNLLQLPHGFDACFMDIQMPEMDGFEATRRIRVMESKANEQMNGGSEECKWHMPILAMTADVIHATHEECLKCGMDGYVSKPFEEENLYKEVAKFFKS 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46349571 46355193 - evm.model.ptg000009l.510 HCH10g1380 553453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1380 986 Gene3D CHASE domain 111 326 IPR042240 -
HCH10g1380 986 PRINTS Bacterial sensor protein C-terminal signature 599 613 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH10g1380 986 PRINTS Bacterial sensor protein C-terminal signature 617 627 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH10g1380 986 PRINTS Bacterial sensor protein C-terminal signature 658 671 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH10g1380 986 PRINTS Bacterial sensor protein C-terminal signature 634 652 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH10g1380 986 FunFam Histidine kinase 4 352 443 - -
HCH10g1380 986 Gene3D - 353 443 - -
HCH10g1380 986 Pfam CHASE domain 110 290 IPR006189 -
HCH10g1380 986 CDD HATPase_EvgS-ArcB-TorS-like 497 672 - -
HCH10g1380 986 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 366 446 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH10g1380 986 SUPERFAMILY CheY-like 852 983 IPR011006 -
HCH10g1380 986 CDD HisKA 380 441 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH10g1380 986 PANTHER TWO-COMPONENT HISTIDINE KINASE 26 984 IPR050956 -
HCH10g1380 986 Pfam Response regulator receiver domain 855 980 IPR001789 GO:0000160(InterPro)
HCH10g1380 986 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 669 IPR036890 -
HCH10g1380 986 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 592 669 IPR003594 -
HCH10g1380 986 ProSiteProfiles Response regulatory domain profile. 699 829 IPR001789 GO:0000160(InterPro)
HCH10g1380 986 SMART HisKA_10 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH10g1380 986 Gene3D - 444 676 IPR036890 -
HCH10g1380 986 SUPERFAMILY CheY-like 694 831 IPR011006 -
HCH10g1380 986 ProSiteProfiles CHASE domain profile. 107 319 IPR006189 -
HCH10g1380 986 ProSiteProfiles Response regulatory domain profile. 854 984 IPR001789 GO:0000160(InterPro)
HCH10g1380 986 SMART HKATPase_4 492 674 IPR003594 -
HCH10g1380 986 SMART CHASE_2 107 292 IPR006189 -
HCH10g1380 986 Pfam His Kinase A (phospho-acceptor) domain 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH10g1380 986 Gene3D - 848 986 - -
HCH10g1380 986 FunFam Histidine kinase 4 111 326 - -
HCH10g1380 986 CDD REC_hyHK_CKI1_RcsC-like 855 980 - -
HCH10g1380 986 Gene3D - 58 110 - -
HCH10g1380 986 ProSiteProfiles Histidine kinase domain profile. 387 674 IPR005467 -
HCH10g1380 986 Coils Coil 430 450 - -
HCH10g1380 986 SMART REC_2 853 980 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1380 HCH-Chr10:46349571 HCH1g0075 HCH-Chr1:6270979 0.00E+00 dispersed
HCH10g1380 HCH-Chr10:46349571 HCH7g0328 HCH-Chr7:2343186 2.80E-279 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32509 PF02518 HATPase_c 5.50E-33 CL0025 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1380 K14489 - csv:101209777 1652.11