Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1388 ATGGAAAGCAACCTCTATAACCTTTCTCCTTCTCCCCTTGTTATTGCTTTGGCAGTGGTTTTTTTCTTATTTGTTTCATCTTCTTTAGCAGAACAAGATGTTACTTCAATAAAGACTGATGCAGAAGCTCTTCTTAAGTTGAAGGATATGATTGATAAGGACCCAAATGGAGTTTTGTCCACTTGGAAGCTTGGAAGTAATCCATGCACATGGTATGGAGTTTCATGTCAATCTGAACGTGCCGTTTCGATCGATTTAAGCGGCTGTAATCTCGCTGGAACGATATATTTTGATCCTCTGAATTCAATGGATATGTTGTCAGCTTTGAATTTGTCTACTAATTCTTTCACCATTAATTCAACTACTTTGCTTAAACTTCCATATAATTTGCAGCAACTTGAGCTCTCTCTTGCTAAAGTTGTAGGCAGTGTACCTGGGAATCTCTTCTCCAAGTGTCCAAATCTTGTTTTTGTGGATCTTTCATTCAACAATCTCACAGGTTCTCTGCCTGAAAATATATTGTTGAATGCTAATAAGCTTCAAGACTTTGATCTCTCTTACAACAATATAACTGGGTCTATCTCAGGCTTGAGCATTGATGAGAATTCTTGCAACTCTTTGTTGCACTTTGATCTTTCGGGAAACCGAATCTTGGGCTCGATTCCGAATGCCATTTCAAACTGCACAAATCTGCAAACACTTGGTTTGTCTTATAATTCTCTAAGTGGGGTACTCCCAAGATCTTTAGGGGAAATCAGGAGTTTACAAAGATTGGATCTATCTCACAATCAACTTACTGGTTGGATACCTTCTGATTGGAGAAATGCATGTAATTCACTGCAAGAACTGAAGCTTTGCTACAACAACATTTCTGGACTAATTCCAGCCTCCCTCTCTACTTGCTCTTGGCTGCAAATTTTGGATCTTTCAAATAACAACATATCTGGTCCTATACCAGATTCCATCTTCAAGAACCTCATCTCTCTACAGAGCTTGGTTTTGAGTAATAACGTTATATCTGGACCATTGCCTTCATCCATATCTCATTGCAAGAAACTTGAGGTTGTAGATTTAAGTTCCAATAAGATTTCTGGCATGATCTCAACCGATATATGCCCCGGTGCTGAGTCACTCCAGGAACTGAAGATGCCGGACAATCTCATCATAGGAGGAATCCCTGCTGAACTCTCACTGTGTCCAAAGCTAAAGACGATCGATTTTAGCTTAAATTATCTGAATGGCTCCATACCTGCAGAGCTTGGAAGGCTTCAGAATCTTGAACAGTTGATAGCATGGTTCAATAGCTTGGAAGGGAAAATCCCTCCTGAATTGGGAAAGTGCAGAAGCTTGAAGGATCTTATACTGAATAACAATCGTTTGAGTGGCAATATCCCTATTGAATTGTTCGATTGCAGTAATCTAGAATGGATTTCTCTCACAAGTAATGAACTCACTGGTGAGATACCAAAGGAATTGGGTCTTTTGTCAAGACTGGGAGTTCTGCAACTTGGGAATAATAGCTTAAGTGGGCAGATACCTGCAGAGTTGGGAAACTGCAGCACTTTGGTTTGGTTGGATTTGAACAGCAATAAGCTTACTGGAGAAATCCCTCCTCGACTCGGTAGGCAGCTTGGAGCCAGATCATTGAATGGAATTCTATCTGGAAACACTCTAGTCTTTGTCCGAAATGTCGGGAATTCGTGCAAAGGAGTTGGTGGTTTGTTAGAATTTGCTGGAATTAGACCTGAAAGACTACTGCAGGAACCAACACTCAAGACCTGTGATTTCACAAGATTGTACTCTGGTCCAGTCCTCAGTCTGTTTACTAAATACCAAACATTAGAGTACCTAGATCTTTCTTACAATGAGCTTCGTGGGAGAATCCCACAAGAGTTCGGCGATATGGTTGCTTTGCAGGTTCTCGAATTATCCGACAACCAACTTTCTGGCGAAATTCCAGCATCTTTTGGCCGCCTAAAGAACTTGGGTGTGTTTGATGCATCACACAACAGACTACAGGGTCATATTCCAGATTCATTCTCAAACTTATCATTCTTAGTTCAAATTGATCTATCTAATAATGAATTAACGGGACGAATTCCGCAAAGGGGACAGCTCAGTACACTTCCTGCAAGTCAATATGCAAACAATCCAGGACTTTGTGGAGTTCCTTTGCCTGAATGCCAGAGTGAAGACCAACCAACAACAAATCCTAATGTGGATCCTGGAAAAGGAAGAACAAAGCCGGAAGCTGTATCGTGGATTAATAGCATTGTCTTAGGTGTTCTTATTTCCATTGCTTGTGTCTGCATTTTGATTGTATGGGCAATTGCCATGCGTGCGAGACGGAGAGAAGCAGAAGATGTAAAGATGCTCAACAGTTTACAAGCAATTCATGCACCAACTACATGGAAAATTGACAAAGAGAAAGAGCCACTGAGCATCAATGTGGCAACTTTCCAAAGACAACTAAGGAAGCTCAAATTCTCCCAACTGATTGAAGCTACCAATGGCTTCTCAGCAGAAAGTTTGATTGGAAGTGGCGGATTCGGTGAAGTGTTTAAAGCAACACTCAAGGATGGGTCAAGTGTTGCAATCAAGAAACTGATACGTCTTAGTTGCCAGGGCGACCGGGAATTTATGGCGGAGATGGAAACTTTGGGAAAGATCAAACATGGAAATCTAGTACCTCTCCTGGGCTACTGTAAAATAGGTGAGGAGAGGCTTCTTGTGTATGAATTTATGGAGTTTGGTAGCCTAGAAGAGATGCTCCATGGAAGGACAAAGACAAAAGATGAGAGACTTCTAACATGGGATGAAAGGAAAAAAATTGCCAGAGGTGCTGCAAAAGGACTCTGTTTCCTACACCACAACTGCATTCCACACATAATACACAGAGACATGAAGTCGAGCAATGTACTATTGGACCATGATTTAGAAGCTAGAGTTTCAGATTTTGGAATGGCAAGGCTGATAAGTGCTCTCGACACCCATCTGAGCGTAAGCACGCTCGCAGGCACTCCCGGTTACGTCCCTCCCGAGTATTACCAAAGCTTCCGGTGCACAGCAAAAGGCGATGTTTATTCATTCGGTGTCGTCCTCCTAGAACTCTTGACAGGAAAACGACCAACTGATAAGGAGGATTTCGGTGATACTAACTTGGTGGGATGGGTTAAAATGAAAGTGAAAGAAGGAAAACAAATGGAAGTAATAGACCCTGAATTGCTTTCAGTAACGAAAGCAAGCGACGAATCGGAAGCCGAAGAAGTTAAAGAAATGGTTAGATATTTGGAGATAACACTCCAATGTGTAGAAGAGTTTCCTTCCAAGAGGCCTAACATGTTGCAGGTGGTTGCCATGCTAAGAGAGTTGATGCCTGGACCAACCAATGGAAGCAGCAATAGTGCTTGA 3411 41.72 MESNLYNLSPSPLVIALAVVFFLFVSSSLAEQDVTSIKTDAEALLKLKDMIDKDPNGVLSTWKLGSNPCTWYGVSCQSERAVSIDLSGCNLAGTIYFDPLNSMDMLSALNLSTNSFTINSTTLLKLPYNLQQLELSLAKVVGSVPGNLFSKCPNLVFVDLSFNNLTGSLPENILLNANKLQDFDLSYNNITGSISGLSIDENSCNSLLHFDLSGNRILGSIPNAISNCTNLQTLGLSYNSLSGVLPRSLGEIRSLQRLDLSHNQLTGWIPSDWRNACNSLQELKLCYNNISGLIPASLSTCSWLQILDLSNNNISGPIPDSIFKNLISLQSLVLSNNVISGPLPSSISHCKKLEVVDLSSNKISGMISTDICPGAESLQELKMPDNLIIGGIPAELSLCPKLKTIDFSLNYLNGSIPAELGRLQNLEQLIAWFNSLEGKIPPELGKCRSLKDLILNNNRLSGNIPIELFDCSNLEWISLTSNELTGEIPKELGLLSRLGVLQLGNNSLSGQIPAELGNCSTLVWLDLNSNKLTGEIPPRLGRQLGARSLNGILSGNTLVFVRNVGNSCKGVGGLLEFAGIRPERLLQEPTLKTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGRIPQEFGDMVALQVLELSDNQLSGEIPASFGRLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGRIPQRGQLSTLPASQYANNPGLCGVPLPECQSEDQPTTNPNVDPGKGRTKPEAVSWINSIVLGVLISIACVCILIVWAIAMRARRREAEDVKMLNSLQAIHAPTTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGSGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHGNLVPLLGYCKIGEERLLVYEFMEFGSLEEMLHGRTKTKDERLLTWDERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHDLEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVKEGKQMEVIDPELLSVTKASDESEAEEVKEMVRYLEITLQCVEEFPSKRPNMLQVVAMLRELMPGPTNGSSNSA 1136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46454610 46458020 + evm.model.ptg000009l.518 HCH10g1388 553461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1388 1136 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 590 1124 IPR050647 -
HCH10g1388 1136 Gene3D - 553 609 - -
HCH10g1388 1136 ProSiteProfiles Protein kinase domain profile. 839 1125 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g1388 1136 Gene3D Phosphorylase Kinase; domain 1 800 914 - -
HCH10g1388 1136 MobiDBLite consensus disorder prediction 725 746 - -
HCH10g1388 1136 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 200 276 - -
HCH10g1388 1136 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 372 464 - -
HCH10g1388 1136 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 277 367 - -
HCH10g1388 1136 Gene3D Ribonuclease Inhibitor 39 149 IPR032675 -
HCH10g1388 1136 Gene3D Transferase(Phosphotransferase) domain 1 915 1130 - -
HCH10g1388 1136 SUPERFAMILY Protein kinase-like (PK-like) 820 1121 IPR011009 -
HCH10g1388 1136 Pfam Leucine rich repeat 607 648 IPR001611 GO:0005515(InterPro)
HCH10g1388 1136 Pfam Leucine rich repeat 304 363 IPR001611 GO:0005515(InterPro)
HCH10g1388 1136 Pfam Leucine rich repeat 209 265 IPR001611 GO:0005515(InterPro)
HCH10g1388 1136 CDD STKc_IRAK 845 1124 - -
HCH10g1388 1136 FunFam Leucine-rich repeat receptor protein kinase EMS1 465 560 - -
HCH10g1388 1136 FunFam serine/threonine-protein kinase BRI1-like 2 915 1132 - -
HCH10g1388 1136 Pfam Protein kinase domain 841 1118 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g1388 1136 ProSitePatterns Protein kinases ATP-binding region signature. 845 868 IPR017441 GO:0005524(InterPro)
HCH10g1388 1136 SUPERFAMILY L domain-like 596 724 - -
HCH10g1388 1136 Pfam Leucine Rich Repeat 498 519 IPR001611 GO:0005515(InterPro)
HCH10g1388 1136 Pfam Leucine Rich Repeat 279 301 IPR001611 GO:0005515(InterPro)
HCH10g1388 1136 Pfam Leucine Rich Repeat 154 173 IPR001611 GO:0005515(InterPro)
HCH10g1388 1136 Pfam Leucine Rich Repeat 522 541 IPR001611 GO:0005515(InterPro)
HCH10g1388 1136 Pfam Leucine Rich Repeat 661 683 IPR001611 GO:0005515(InterPro)
HCH10g1388 1136 Pfam Leucine Rich Repeat 473 493 IPR001611 GO:0005515(InterPro)
HCH10g1388 1136 Pfam Brassinosteroid receptor island domain 550 608 IPR045381 -
HCH10g1388 1136 FunFam serine/threonine-protein kinase BRI1-like 2 39 150 - -
HCH10g1388 1136 SMART serkin_6 839 1125 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g1388 1136 SMART LRR_typ_2 228 251 IPR003591 -
HCH10g1388 1136 SMART LRR_typ_2 635 659 IPR003591 -
HCH10g1388 1136 SMART LRR_typ_2 423 447 IPR003591 -
HCH10g1388 1136 SMART LRR_typ_2 152 176 IPR003591 -
HCH10g1388 1136 SMART LRR_typ_2 252 275 IPR003591 -
HCH10g1388 1136 SMART LRR_typ_2 326 350 IPR003591 -
HCH10g1388 1136 SMART LRR_typ_2 304 325 IPR003591 -
HCH10g1388 1136 SMART LRR_typ_2 448 471 IPR003591 -
HCH10g1388 1136 SMART LRR_typ_2 495 519 IPR003591 -
HCH10g1388 1136 FunFam serine/threonine-protein kinase BRI1-like 2 800 914 - -
HCH10g1388 1136 SUPERFAMILY L domain-like 62 274 - -
HCH10g1388 1136 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 606 728 - -
HCH10g1388 1136 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
HCH10g1388 1136 SUPERFAMILY RNI-like 220 539 - -
HCH10g1388 1136 Gene3D Ribonuclease Inhibitor 177 728 IPR032675 -
HCH10g1388 1136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 963 975 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1388 HCH-Chr10:46454610 HCH14g0183 HCH-Chr14:27506950 2.20E-142 dispersed
HCH10g1388 HCH-Chr10:46454610 HCH4g1243 HCH-Chr4:8488622 3.30E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81016 PF00069 Pkinase 5.60E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1388 - - - 0.0