Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g1389 | ATGTTGAAGAGTACTTCTGGTGGTCCTTCAGCAGCTACTTCCTCAGAATTAGCTTTTCCCTCTCCAGAAAATGGGGTCACTCCCAAAAGAAAAAGAAGACCAGCAGGCACTCCAGATCCGGATGCGGAAGTGGTGTCGTTATCGCCGAAGACGTTGTTGGAATCGGATCGATATGTGTGTGAGATATGCAACCAAGGGTTTCAAAGGGATCAGAATTTACAGATGCATAGAAGAAGGCACAAGGTGCCATGGAAGCTTCTGAAGAGGCCAGAAAGTGAAGATCAAGTAGTGAAGAAGAAGGTGTTTGTTTGTCCAGAACCAAGCTGCTTACACCATGATCCATGCCATGCCTTAGGAGACCTAGTTGGGATTAAGAAACATTATAGAAGAAAACATAGCAATCAAAAGCAATGGGTTTGTGATAAATGTTCTAAAGGATATGCTGTTCATTCTGATTTCAAAGCTCATCTCAAAACTTGTGGTACTAGAGGCCATTCTTGTGATTGTGGCCGTGTCTTCTCCAGAGTGGAAAGCTTCATAGAGCACCAAGACGCTTGTGATTTCAGACAAGTGATGCCTGAACTGCAGCGGCCGCCGCCGCCGCAACAACTTCCGAGCTTCTACTCTCGATCGGTATCTTGCCCTACTACCGACAATGCTTTGCCACTGCGAGGGTTTCCGATCCTTTCAAACCCGGATCGGAATCGGAATAATATCAACATTAATTTCCCTTCAACTTCAGGTCATCTTCAGCAGTACCATGATCTTGAACTCCATCTTTCTTCTCCAAATTCAGTCCAAAACTGTGCCACCTTTCTCAAACTCTCAATTGGGTCGTGCTCTGGTGGTGGTGATCAGCAGAATGAATCAAACATGGACGATCAGCATCAGCTTCAGCTTGAGCTAGCCATGGCGGAGACCGAGAAGGCCTACGCCGATGAAGCGAGGCGAGAGTCGAAGCGGCAAATCGAGATAGCGGAGGTCGAGTTTGCAAATGCAAAGATGATAAGACAGCAAGCTCACGCTGAATTGGAAAAGGCAAGGATTTTGAAAGAAGAAGCAAGCAGGAAAATGAGCTCCACCCTTATGGAAATCACTTGCCAAATGTGTAGACAGCAGTTTCAGTTTCAGTTTCAGGTCAATTCCGCCGCTACCTCTAATCTCGTGCCGCCGGAGGAGACATCTCTTGCTATCAGTTACATGTCTTCTGCTACAACAGAAGGGGAGGGAGAGTAA | 1236 | 46.52 | MLKSTSGGPSAATSSELAFPSPENGVTPKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRPESEDQVVKKKVFVCPEPSCLHHDPCHALGDLVGIKKHYRRKHSNQKQWVCDKCSKGYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACDFRQVMPELQRPPPPQQLPSFYSRSVSCPTTDNALPLRGFPILSNPDRNRNNININFPSTSGHLQQYHDLELHLSSPNSVQNCATFLKLSIGSCSGGGDQQNESNMDDQHQLQLELAMAETEKAYADEARRESKRQIEIAEVEFANAKMIRQQAHAELEKARILKEEASRKMSSTLMEITCQMCRQQFQFQFQVNSAATSNLVPPEETSLAISYMSSATTEGEGE | 411 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 46466717 | 46468558 | - | evm.model.ptg000009l.519 | HCH10g1389 | 553462 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g1389 | 411 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
HCH10g1389 | 411 | Coils | Coil | 337 | 357 | - | - | |
HCH10g1389 | 411 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
HCH10g1389 | 411 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 356 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
HCH10g1389 | 411 | SMART | c2h2final6 | 138 | 165 | IPR013087 | - | |
HCH10g1389 | 411 | SMART | c2h2final6 | 58 | 80 | IPR013087 | - | |
HCH10g1389 | 411 | SMART | c2h2final6 | 102 | 132 | IPR013087 | - | |
HCH10g1389 | 411 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 137 | 161 | - | - | |
HCH10g1389 | 411 | SUPERFAMILY | beta-beta-alpha zinc fingers | 57 | 158 | IPR036236 | - | |
HCH10g1389 | 411 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 60 | 80 | IPR013087 | - | |
HCH10g1389 | 411 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 58 | 80 | IPR013087 | - | |
HCH10g1389 | 411 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 98 | 132 | - | - | |
HCH10g1389 | 411 | Gene3D | Classic Zinc Finger | 123 | 197 | - | - | |
HCH10g1389 | 411 | FunFam | protein indeterminate-domain 12-like | 37 | 108 | - | - | |
HCH10g1389 | 411 | Pfam | Zinc finger, C2H2 type | 58 | 80 | IPR013087 | - | |
HCH10g1389 | 411 | Gene3D | Classic Zinc Finger | 36 | 107 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g1389 | HCH-Chr10:46466717 | HCH3g0011 | HCH-Chr3:109603 | 3.50E-98 | dispersed | |
HCH10g1389 | HCH-Chr10:46466717 | HCH6g0106 | HCH-Chr6:1325702 | 6.80E-62 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32511 | PF00096 | zf-C2H2 | 0.0038 | CL0361 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g1389 | K25871 | - | csv:101210468 | 510.375 |