Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1389 ATGTTGAAGAGTACTTCTGGTGGTCCTTCAGCAGCTACTTCCTCAGAATTAGCTTTTCCCTCTCCAGAAAATGGGGTCACTCCCAAAAGAAAAAGAAGACCAGCAGGCACTCCAGATCCGGATGCGGAAGTGGTGTCGTTATCGCCGAAGACGTTGTTGGAATCGGATCGATATGTGTGTGAGATATGCAACCAAGGGTTTCAAAGGGATCAGAATTTACAGATGCATAGAAGAAGGCACAAGGTGCCATGGAAGCTTCTGAAGAGGCCAGAAAGTGAAGATCAAGTAGTGAAGAAGAAGGTGTTTGTTTGTCCAGAACCAAGCTGCTTACACCATGATCCATGCCATGCCTTAGGAGACCTAGTTGGGATTAAGAAACATTATAGAAGAAAACATAGCAATCAAAAGCAATGGGTTTGTGATAAATGTTCTAAAGGATATGCTGTTCATTCTGATTTCAAAGCTCATCTCAAAACTTGTGGTACTAGAGGCCATTCTTGTGATTGTGGCCGTGTCTTCTCCAGAGTGGAAAGCTTCATAGAGCACCAAGACGCTTGTGATTTCAGACAAGTGATGCCTGAACTGCAGCGGCCGCCGCCGCCGCAACAACTTCCGAGCTTCTACTCTCGATCGGTATCTTGCCCTACTACCGACAATGCTTTGCCACTGCGAGGGTTTCCGATCCTTTCAAACCCGGATCGGAATCGGAATAATATCAACATTAATTTCCCTTCAACTTCAGGTCATCTTCAGCAGTACCATGATCTTGAACTCCATCTTTCTTCTCCAAATTCAGTCCAAAACTGTGCCACCTTTCTCAAACTCTCAATTGGGTCGTGCTCTGGTGGTGGTGATCAGCAGAATGAATCAAACATGGACGATCAGCATCAGCTTCAGCTTGAGCTAGCCATGGCGGAGACCGAGAAGGCCTACGCCGATGAAGCGAGGCGAGAGTCGAAGCGGCAAATCGAGATAGCGGAGGTCGAGTTTGCAAATGCAAAGATGATAAGACAGCAAGCTCACGCTGAATTGGAAAAGGCAAGGATTTTGAAAGAAGAAGCAAGCAGGAAAATGAGCTCCACCCTTATGGAAATCACTTGCCAAATGTGTAGACAGCAGTTTCAGTTTCAGTTTCAGGTCAATTCCGCCGCTACCTCTAATCTCGTGCCGCCGGAGGAGACATCTCTTGCTATCAGTTACATGTCTTCTGCTACAACAGAAGGGGAGGGAGAGTAA 1236 46.52 MLKSTSGGPSAATSSELAFPSPENGVTPKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRPESEDQVVKKKVFVCPEPSCLHHDPCHALGDLVGIKKHYRRKHSNQKQWVCDKCSKGYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACDFRQVMPELQRPPPPQQLPSFYSRSVSCPTTDNALPLRGFPILSNPDRNRNNININFPSTSGHLQQYHDLELHLSSPNSVQNCATFLKLSIGSCSGGGDQQNESNMDDQHQLQLELAMAETEKAYADEARRESKRQIEIAEVEFANAKMIRQQAHAELEKARILKEEASRKMSSTLMEITCQMCRQQFQFQFQVNSAATSNLVPPEETSLAISYMSSATTEGEGE 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46466717 46468558 - evm.model.ptg000009l.519 HCH10g1389 553462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1389 411 MobiDBLite consensus disorder prediction 1 48 - -
HCH10g1389 411 Coils Coil 337 357 - -
HCH10g1389 411 MobiDBLite consensus disorder prediction 1 21 - -
HCH10g1389 411 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 356 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH10g1389 411 SMART c2h2final6 138 165 IPR013087 -
HCH10g1389 411 SMART c2h2final6 58 80 IPR013087 -
HCH10g1389 411 SMART c2h2final6 102 132 IPR013087 -
HCH10g1389 411 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
HCH10g1389 411 SUPERFAMILY beta-beta-alpha zinc fingers 57 158 IPR036236 -
HCH10g1389 411 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
HCH10g1389 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
HCH10g1389 411 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
HCH10g1389 411 Gene3D Classic Zinc Finger 123 197 - -
HCH10g1389 411 FunFam protein indeterminate-domain 12-like 37 108 - -
HCH10g1389 411 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
HCH10g1389 411 Gene3D Classic Zinc Finger 36 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1389 HCH-Chr10:46466717 HCH3g0011 HCH-Chr3:109603 3.50E-98 dispersed
HCH10g1389 HCH-Chr10:46466717 HCH6g0106 HCH-Chr6:1325702 6.80E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32511 PF00096 zf-C2H2 0.0038 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1389 K25871 - csv:101210468 510.375