Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0001 | ATGCAACCGCTGCTATTTCTAGCTTTCTTCTACGCTGGAATTCTCACCACGCTTTCCCTTACTGATACACGTGATTCTGTGCCACTCGAATCCCTGAAAGACCAATGGCAAAATACACCACCAAGCTGGGGAGCATCAAATGATCCGTGTGGAGCTCCCTGGGATGGAGTCACTTGCAACAATTCAAGAGTCACTGCATTGAGACTATCAACTATGGGCCTCAGAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAGCTCAGATCTTTGGACCTTTCATTCAATCGAGATCTCACTGGTTCTCTCTCTCCAGCACTGGGAAATTTGAAGAATTTGGAGATCTTGATCCTAGCTGGGTGTGGCTTTAGTGGTAATATCCCAGAAGAATTGGGCAATCTTGCTGAGCTATCCTTCTTGGCTTTAAATAATAACAATTTCACTGGTACCATTCCTCCAACTTTGGGAAGACTTTCAAAACTGTATTGGCTAGACTTAGCAGATAATCAGCTGACAGGAAGTATCCCAGTTTCAAATTCAACATCACCGGGTTTAGACCTCCTTCTTAAGGCTAAGCACTTTCATTTCAACAAAAACCAGTTATCAGGAACCATTTCACCGAAACTTTTTAGCTCTGAGATGGAATTAATACACATATTATTTGACGGGAATAGACTTACCGGAAGTATTCCACCAACATTGGGACTTGTTAAGACCCTTGAAGTTCTTCGCCTTGATCGAAATTCTCTCATAGGAAATGTCCCATCAAATCTCAGCAACCTAATACACATTAGTGAATTGAATTTAGCGTACAATAATCTAGCAGGTCCACTGCCAAACTTAGCTCCAATAAGTTCACTAAGTTATTTGGACCTTAGTAACAACTCATTTGATTCATCAGAAGCTCCAGATTGGTTCTCAACTCTATCATCTCTCACCACTCTGGTTATTGAATATGGATCAATACAAGGACCTGTGCCGCAAGGAGTCTTTAGCTTACCGCAGATACAACAAGTAAAACTGAAGAACAATGCATTTAATGGAACATTAAATATGGGTGACAGCGTCAGCCAACAACTGCAGCTTGTTGATTTGCAGAATAACCACATTGCTTCATTTACATTGGGTTCTGGATATAACAAAACTTTGATGCTGGTAGGAAATCCAGTGTGTAACACTGATGATGCCCTGTCAAATTCAAACTATTGCCGGTTACTACAACAGAGAATGAATCCGTATTCCACCAGCCTTATCAACTGTGGAAGTAAGTCTTGTCCTCCTGATGAGAAGTTGAGCCCTCAGAGTTGTGAATGTGCCCATCCATATGAAGGAACTTTGTACTTTAGAGGACCTTCATTTAGGGAATTGACCAACATGACACTATTTCAGTCACTGGAAAGGAGCCTTTGGGAAAAACTAGACCTTACTCCTGGTTCAGTTTCTCTTCAAAACCTTTTCTTTAATATTGATGACTATCTTCAGATGCAGCTTGCACTTTTTCCACCAAATGGAGAGTATTTCAATAGGTCAGAAATTCAGAGGATTGGGTTTGCATTAAGTAATCAAACTTACAAACCTCCACATCAATTGGGGTTTGGGCCATATTTTTTCATTGCATCTCCTTATGCTTTTTCAGACGGAGATGGGGATAGGAAAACTTCTATCAGCACTGGAGTGATAATTGGGATCGCTGTTGGTTGTTCCCTTCTCGTTCTAGGCCTCATCGGAGTTGGATTATATGCTATCCGACAAAAGAAACGTGCAGAAAAGGCCATTATATTGAGTAAGCCATTTGCTTCCTGGGCACCAAGTGGAAACGATAGTGGAGGTGGAGGTGCACCACAGTTAAAGGGAGCGAGATGGTTTTCTTATGATGAACTTAAAAAGTGCACAAGTAATTTCTCAATGAGAAATGAGATTGGATCTGGGGGATATGGTAAGGTGTATAGGGGAGTTCTAGTGGATGGACAAGTTGTTGCAATTAAAAGAGCTCAACAAGGATCCATGCAAGGTGGGCTTGAGTTCAAGACAGAAATAGAACTGCTCTCACGAACACATCACAAGAATCTGGTTGGGCTTTTAGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATTCATGCCTAATGGAACGCTTAGAGAGAGCTTATCCGGGAAATCTGGTATTTATCTTGATTGGAAAAGAAGGCTTCGCATTGCACTTGGGTCTGCTAGAGGATTGGCTTACTTACACGAGCTTGCAAATCCTCCCATAATCCATAGAGATATAAAATCCACCAACATTCTTTTGGATGAACATTTAAATGCAAAGGTTGCAGATTTTGGATTGTCAAAGCTTGTGTCGGACAGTGAGAAGGGACATGTTTCAACTCAAGTGAAAGGCACACTGGGGTATCTGGATCCCGAATATTACATGACTCAACAATTAACAGAGAAGAGTGACGTATACAGCTTCGGAGTAGTGATGCTAGAACTAATAAGTGGTAAGCTACCGATTGAGAAAGGGAAATACATAGTACGAGAGGTACGTACATTGATGAATAAGAATGAGGAGGAATACTACGGATTGAAGGAGATAATGGATCAAAGCATTGTAAAAAACAATACAAATTTAATTGGGTTTGGAAGGTTCTTAGAATTGGCAATGCAATGCGTGGAAGAATCAGCTGGAGATCGTCCGACGATGAGTGATATGGTTAAATCAATAGAGACCATTTTATTGAATGATGGAATAAATACAAACACGACATCTGCATCATCATCTGCCACAGAGTTTGGAACTTCGAAAGCGGCTCCCCCAAGACATCCCTACAATGATGCTATACCACTATCAAAGAAGGATGTGGATGAAAGTCATTCTTTTGATTATAGTGGTGGATACAATCTTTCTACAAAAGTGGAACCCAAGTAG | 2919 | 40.94 | MQPLLFLAFFYAGILTTLSLTDTRDSVPLESLKDQWQNTPPSWGASNDPCGAPWDGVTCNNSRVTALRLSTMGLRGKLGGDIGGLTELRSLDLSFNRDLTGSLSPALGNLKNLEILILAGCGFSGNIPEELGNLAELSFLALNNNNFTGTIPPTLGRLSKLYWLDLADNQLTGSIPVSNSTSPGLDLLLKAKHFHFNKNQLSGTISPKLFSSEMELIHILFDGNRLTGSIPPTLGLVKTLEVLRLDRNSLIGNVPSNLSNLIHISELNLAYNNLAGPLPNLAPISSLSYLDLSNNSFDSSEAPDWFSTLSSLTTLVIEYGSIQGPVPQGVFSLPQIQQVKLKNNAFNGTLNMGDSVSQQLQLVDLQNNHIASFTLGSGYNKTLMLVGNPVCNTDDALSNSNYCRLLQQRMNPYSTSLINCGSKSCPPDEKLSPQSCECAHPYEGTLYFRGPSFRELTNMTLFQSLERSLWEKLDLTPGSVSLQNLFFNIDDYLQMQLALFPPNGEYFNRSEIQRIGFALSNQTYKPPHQLGFGPYFFIASPYAFSDGDGDRKTSISTGVIIGIAVGCSLLVLGLIGVGLYAIRQKKRAEKAIILSKPFASWAPSGNDSGGGGAPQLKGARWFSYDELKKCTSNFSMRNEIGSGGYGKVYRGVLVDGQVVAIKRAQQGSMQGGLEFKTEIELLSRTHHKNLVGLLGFCFEQGEQMLVYEFMPNGTLRESLSGKSGIYLDWKRRLRIALGSARGLAYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELISGKLPIEKGKYIVREVRTLMNKNEEEYYGLKEIMDQSIVKNNTNLIGFGRFLELAMQCVEESAGDRPTMSDMVKSIETILLNDGINTNTTSASSSATEFGTSKAAPPRHPYNDAIPLSKKDVDESHSFDYSGGYNLSTKVEPK | 972 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 592834 | 597441 | + | evm.model.ptg000018l.614 | HCH11g0001 | 553468 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0001 | 972 | Gene3D | Transferase(Phosphotransferase) domain 1 | 710 | 927 | - | - | |
HCH11g0001 | 972 | SUPERFAMILY | Protein kinase-like (PK-like) | 619 | 917 | IPR011009 | - | |
HCH11g0001 | 972 | Gene3D | Ribonuclease Inhibitor | 26 | 183 | IPR032675 | - | |
HCH11g0001 | 972 | FunFam | Predicted protein | 183 | 403 | - | - | |
HCH11g0001 | 972 | SUPERFAMILY | L domain-like | 48 | 421 | - | - | |
HCH11g0001 | 972 | Gene3D | Phosphorylase Kinase; domain 1 | 611 | 709 | - | - | |
HCH11g0001 | 972 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 710 | 921 | - | - | |
HCH11g0001 | 972 | Pfam | Leucine Rich Repeat | 137 | 158 | IPR001611 | GO:0005515(InterPro) | |
HCH11g0001 | 972 | Pfam | Leucine Rich Repeat | 112 | 134 | IPR001611 | GO:0005515(InterPro) | |
HCH11g0001 | 972 | Pfam | Leucine Rich Repeat | 286 | 309 | IPR001611 | GO:0005515(InterPro) | |
HCH11g0001 | 972 | CDD | STKc_IRAK | 640 | 908 | - | - | |
HCH11g0001 | 972 | MobiDBLite | consensus disorder prediction | 919 | 972 | - | - | |
HCH11g0001 | 972 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 41 | 906 | - | - | |
HCH11g0001 | 972 | SMART | serkin_6 | 634 | 888 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH11g0001 | 972 | Gene3D | Ribonuclease Inhibitor | 280 | 424 | IPR032675 | - | |
HCH11g0001 | 972 | FunFam | Leucine-rich repeat family protein | 24 | 180 | - | - | |
HCH11g0001 | 972 | ProSitePatterns | Protein kinases ATP-binding region signature. | 640 | 662 | IPR017441 | GO:0005524(InterPro) | |
HCH11g0001 | 972 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 754 | 766 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH11g0001 | 972 | Pfam | Protein tyrosine and serine/threonine kinase | 636 | 904 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH11g0001 | 972 | ProSiteProfiles | Protein kinase domain profile. | 634 | 909 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH11g0001 | 972 | Gene3D | Ribonuclease Inhibitor | 192 | 279 | IPR032675 | - | |
HCH11g0001 | 972 | FunFam | Leucine-rich repeat protein kinase family protein | 605 | 709 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0001 | HCH-Chr11:592834 | HCH11g0602 | HCH-Chr11:13209983 | 6.50E-305 | dispersed | |
HCH6g0727 | HCH-Chr6:40823710 | HCH11g0001 | HCH-Chr11:592834 | 2.30E-60 | dispersed | |
HCH8g0246 | HCH-Chr8:11676060 | HCH11g0001 | HCH-Chr11:592834 | 1.20E-50 | dispersed | |
HCH11g0001 | HCH-Chr11:592834 | HCH11g0647 | HCH-Chr11:28098178 | 0.00E+00 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81017 | PF07714 | PK_Tyr_Ser-Thr | 4.90E-48 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0001 | - | - | - | 0.0 |