Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0001 ATGCAACCGCTGCTATTTCTAGCTTTCTTCTACGCTGGAATTCTCACCACGCTTTCCCTTACTGATACACGTGATTCTGTGCCACTCGAATCCCTGAAAGACCAATGGCAAAATACACCACCAAGCTGGGGAGCATCAAATGATCCGTGTGGAGCTCCCTGGGATGGAGTCACTTGCAACAATTCAAGAGTCACTGCATTGAGACTATCAACTATGGGCCTCAGAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAGCTCAGATCTTTGGACCTTTCATTCAATCGAGATCTCACTGGTTCTCTCTCTCCAGCACTGGGAAATTTGAAGAATTTGGAGATCTTGATCCTAGCTGGGTGTGGCTTTAGTGGTAATATCCCAGAAGAATTGGGCAATCTTGCTGAGCTATCCTTCTTGGCTTTAAATAATAACAATTTCACTGGTACCATTCCTCCAACTTTGGGAAGACTTTCAAAACTGTATTGGCTAGACTTAGCAGATAATCAGCTGACAGGAAGTATCCCAGTTTCAAATTCAACATCACCGGGTTTAGACCTCCTTCTTAAGGCTAAGCACTTTCATTTCAACAAAAACCAGTTATCAGGAACCATTTCACCGAAACTTTTTAGCTCTGAGATGGAATTAATACACATATTATTTGACGGGAATAGACTTACCGGAAGTATTCCACCAACATTGGGACTTGTTAAGACCCTTGAAGTTCTTCGCCTTGATCGAAATTCTCTCATAGGAAATGTCCCATCAAATCTCAGCAACCTAATACACATTAGTGAATTGAATTTAGCGTACAATAATCTAGCAGGTCCACTGCCAAACTTAGCTCCAATAAGTTCACTAAGTTATTTGGACCTTAGTAACAACTCATTTGATTCATCAGAAGCTCCAGATTGGTTCTCAACTCTATCATCTCTCACCACTCTGGTTATTGAATATGGATCAATACAAGGACCTGTGCCGCAAGGAGTCTTTAGCTTACCGCAGATACAACAAGTAAAACTGAAGAACAATGCATTTAATGGAACATTAAATATGGGTGACAGCGTCAGCCAACAACTGCAGCTTGTTGATTTGCAGAATAACCACATTGCTTCATTTACATTGGGTTCTGGATATAACAAAACTTTGATGCTGGTAGGAAATCCAGTGTGTAACACTGATGATGCCCTGTCAAATTCAAACTATTGCCGGTTACTACAACAGAGAATGAATCCGTATTCCACCAGCCTTATCAACTGTGGAAGTAAGTCTTGTCCTCCTGATGAGAAGTTGAGCCCTCAGAGTTGTGAATGTGCCCATCCATATGAAGGAACTTTGTACTTTAGAGGACCTTCATTTAGGGAATTGACCAACATGACACTATTTCAGTCACTGGAAAGGAGCCTTTGGGAAAAACTAGACCTTACTCCTGGTTCAGTTTCTCTTCAAAACCTTTTCTTTAATATTGATGACTATCTTCAGATGCAGCTTGCACTTTTTCCACCAAATGGAGAGTATTTCAATAGGTCAGAAATTCAGAGGATTGGGTTTGCATTAAGTAATCAAACTTACAAACCTCCACATCAATTGGGGTTTGGGCCATATTTTTTCATTGCATCTCCTTATGCTTTTTCAGACGGAGATGGGGATAGGAAAACTTCTATCAGCACTGGAGTGATAATTGGGATCGCTGTTGGTTGTTCCCTTCTCGTTCTAGGCCTCATCGGAGTTGGATTATATGCTATCCGACAAAAGAAACGTGCAGAAAAGGCCATTATATTGAGTAAGCCATTTGCTTCCTGGGCACCAAGTGGAAACGATAGTGGAGGTGGAGGTGCACCACAGTTAAAGGGAGCGAGATGGTTTTCTTATGATGAACTTAAAAAGTGCACAAGTAATTTCTCAATGAGAAATGAGATTGGATCTGGGGGATATGGTAAGGTGTATAGGGGAGTTCTAGTGGATGGACAAGTTGTTGCAATTAAAAGAGCTCAACAAGGATCCATGCAAGGTGGGCTTGAGTTCAAGACAGAAATAGAACTGCTCTCACGAACACATCACAAGAATCTGGTTGGGCTTTTAGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATTCATGCCTAATGGAACGCTTAGAGAGAGCTTATCCGGGAAATCTGGTATTTATCTTGATTGGAAAAGAAGGCTTCGCATTGCACTTGGGTCTGCTAGAGGATTGGCTTACTTACACGAGCTTGCAAATCCTCCCATAATCCATAGAGATATAAAATCCACCAACATTCTTTTGGATGAACATTTAAATGCAAAGGTTGCAGATTTTGGATTGTCAAAGCTTGTGTCGGACAGTGAGAAGGGACATGTTTCAACTCAAGTGAAAGGCACACTGGGGTATCTGGATCCCGAATATTACATGACTCAACAATTAACAGAGAAGAGTGACGTATACAGCTTCGGAGTAGTGATGCTAGAACTAATAAGTGGTAAGCTACCGATTGAGAAAGGGAAATACATAGTACGAGAGGTACGTACATTGATGAATAAGAATGAGGAGGAATACTACGGATTGAAGGAGATAATGGATCAAAGCATTGTAAAAAACAATACAAATTTAATTGGGTTTGGAAGGTTCTTAGAATTGGCAATGCAATGCGTGGAAGAATCAGCTGGAGATCGTCCGACGATGAGTGATATGGTTAAATCAATAGAGACCATTTTATTGAATGATGGAATAAATACAAACACGACATCTGCATCATCATCTGCCACAGAGTTTGGAACTTCGAAAGCGGCTCCCCCAAGACATCCCTACAATGATGCTATACCACTATCAAAGAAGGATGTGGATGAAAGTCATTCTTTTGATTATAGTGGTGGATACAATCTTTCTACAAAAGTGGAACCCAAGTAG 2919 40.94 MQPLLFLAFFYAGILTTLSLTDTRDSVPLESLKDQWQNTPPSWGASNDPCGAPWDGVTCNNSRVTALRLSTMGLRGKLGGDIGGLTELRSLDLSFNRDLTGSLSPALGNLKNLEILILAGCGFSGNIPEELGNLAELSFLALNNNNFTGTIPPTLGRLSKLYWLDLADNQLTGSIPVSNSTSPGLDLLLKAKHFHFNKNQLSGTISPKLFSSEMELIHILFDGNRLTGSIPPTLGLVKTLEVLRLDRNSLIGNVPSNLSNLIHISELNLAYNNLAGPLPNLAPISSLSYLDLSNNSFDSSEAPDWFSTLSSLTTLVIEYGSIQGPVPQGVFSLPQIQQVKLKNNAFNGTLNMGDSVSQQLQLVDLQNNHIASFTLGSGYNKTLMLVGNPVCNTDDALSNSNYCRLLQQRMNPYSTSLINCGSKSCPPDEKLSPQSCECAHPYEGTLYFRGPSFRELTNMTLFQSLERSLWEKLDLTPGSVSLQNLFFNIDDYLQMQLALFPPNGEYFNRSEIQRIGFALSNQTYKPPHQLGFGPYFFIASPYAFSDGDGDRKTSISTGVIIGIAVGCSLLVLGLIGVGLYAIRQKKRAEKAIILSKPFASWAPSGNDSGGGGAPQLKGARWFSYDELKKCTSNFSMRNEIGSGGYGKVYRGVLVDGQVVAIKRAQQGSMQGGLEFKTEIELLSRTHHKNLVGLLGFCFEQGEQMLVYEFMPNGTLRESLSGKSGIYLDWKRRLRIALGSARGLAYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELISGKLPIEKGKYIVREVRTLMNKNEEEYYGLKEIMDQSIVKNNTNLIGFGRFLELAMQCVEESAGDRPTMSDMVKSIETILLNDGINTNTTSASSSATEFGTSKAAPPRHPYNDAIPLSKKDVDESHSFDYSGGYNLSTKVEPK 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 592834 597441 + evm.model.ptg000018l.614 HCH11g0001 553468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0001 972 Gene3D Transferase(Phosphotransferase) domain 1 710 927 - -
HCH11g0001 972 SUPERFAMILY Protein kinase-like (PK-like) 619 917 IPR011009 -
HCH11g0001 972 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
HCH11g0001 972 FunFam Predicted protein 183 403 - -
HCH11g0001 972 SUPERFAMILY L domain-like 48 421 - -
HCH11g0001 972 Gene3D Phosphorylase Kinase; domain 1 611 709 - -
HCH11g0001 972 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 710 921 - -
HCH11g0001 972 Pfam Leucine Rich Repeat 137 158 IPR001611 GO:0005515(InterPro)
HCH11g0001 972 Pfam Leucine Rich Repeat 112 134 IPR001611 GO:0005515(InterPro)
HCH11g0001 972 Pfam Leucine Rich Repeat 286 309 IPR001611 GO:0005515(InterPro)
HCH11g0001 972 CDD STKc_IRAK 640 908 - -
HCH11g0001 972 MobiDBLite consensus disorder prediction 919 972 - -
HCH11g0001 972 PANTHER RECEPTOR-LIKE PROTEIN 55 41 906 - -
HCH11g0001 972 SMART serkin_6 634 888 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0001 972 Gene3D Ribonuclease Inhibitor 280 424 IPR032675 -
HCH11g0001 972 FunFam Leucine-rich repeat family protein 24 180 - -
HCH11g0001 972 ProSitePatterns Protein kinases ATP-binding region signature. 640 662 IPR017441 GO:0005524(InterPro)
HCH11g0001 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 754 766 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0001 972 Pfam Protein tyrosine and serine/threonine kinase 636 904 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0001 972 ProSiteProfiles Protein kinase domain profile. 634 909 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0001 972 Gene3D Ribonuclease Inhibitor 192 279 IPR032675 -
HCH11g0001 972 FunFam Leucine-rich repeat protein kinase family protein 605 709 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0001 HCH-Chr11:592834 HCH11g0602 HCH-Chr11:13209983 6.50E-305 dispersed
HCH6g0727 HCH-Chr6:40823710 HCH11g0001 HCH-Chr11:592834 2.30E-60 dispersed
HCH8g0246 HCH-Chr8:11676060 HCH11g0001 HCH-Chr11:592834 1.20E-50 dispersed
HCH11g0001 HCH-Chr11:592834 HCH11g0647 HCH-Chr11:28098178 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81017 PF07714 PK_Tyr_Ser-Thr 4.90E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0001 - - - 0.0