Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0003 ATGGGTAACTGCGGTACTAGAGAAGAATCTGCAGTTGTTTCCAATGCTCAAGTTCAACAGCTGCATTCTTCTCTGGGTGTCAAAAACAATGCTACTGATAAAAAGCATTTTCATAATCGTTCCAGTTCAGATCTAACCGATCCTTCCACTCCTCGCAACTTTGACCACTTTCGAAGCAATGCTCTTCTTTACACTCATGTCATCGCCTTTACTTTATACGAGCTCGAGACCATCACTAAGAGTTTTCGCTCCGATTACATTCTCGGTGAGGGCGGTTTTGGTACTGTTTATAAAGGTTACATTGATGAGAATGTCAGGGTTGGCCTCAAATCTCTTCCCGTCGCCGTCAAGGTTCTCAACAAGGAAGGCCTTCAGGGCCACCGAGAATGGCTTACGGAAGTCAACTTTCTCGGTCAGCTAAGACATCCAAATCTTGTCAAGTTGATTGGGTATTGCTGCGAGGACGATCACAGATTACTTGTCTACGAGTTCATGTTTCGTGGAAGCCTTGAAAACCACCTCTTTCGAAAGACAACCGCTCCATTGCCGTGGGCCACAAGAATGATGATTGCTCTTGGAGCAGCCAAAGGACTTGCTTTCCTTCATAATGCTGAAAGGCCCGTTATCTATCGGGATTTTAAAACCTCTAATATACTGTTAGACTCTGACTATGCAGCCAAGCTTTCTGATTTCGGGCTTGCAAAAGCTGGACCACAAGGTGATGAGACACATGTTTCAACTCGAGTAATGGGTACCTATGGTTATGCCGCCCCCGAATATGTCATGACTGGCCACTTGACAGCAAGGAGTGATGTATACAGCTTTGGTGTTGTTCTTCTGGAGCTTTTGACGGGAAGAAAATCCGTTGACAAGACAAAACCAAGCAAAGAGCAGAATTTGGTAGATTGGGCCCGTCCCAAACTAAATGACAAGAGAAAGTTGCTACAAATAATTGACCCCAGATTGGAAAATCAGTACTCGATAAGGGCAGCACAGAAGGCGTGCAGCCTGGCATACTATTGCCTAAGCCAGAATCCAAAAGCAAGACCCTTAATGAGCGATGTAGTTGAAACTTTGGAACCATTACAGAGCTGTAGTGAAGGTGGAAGTGAATACACATCAACGGGAAGTAGTCCATTTGTGAGGGGTGGCATACCTGATTACAGGATGCGGCAAAGGTTTACGAATGTTGGTCCAGGAGCTAGTTGCCGGTCTCCGAACCCCAATTGTTCCCCAGGTGGCCCTGCTGCATGTAGGGTTAGATGA 1266 45.81 MGNCGTREESAVVSNAQVQQLHSSLGVKNNATDKKHFHNRSSSDLTDPSTPRNFDHFRSNALLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKTTAPLPWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYAAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTKPSKEQNLVDWARPKLNDKRKLLQIIDPRLENQYSIRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSCSEGGSEYTSTGSSPFVRGGIPDYRMRQRFTNVGPGASCRSPNPNCSPGGPAACRVR 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 604050 612770 - evm.model.ptg000018l.612 HCH11g0003 553470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0003 421 Pfam Protein tyrosine and serine/threonine kinase 87 359 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0003 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0003 421 Gene3D Phosphorylase Kinase; domain 1 49 164 - -
HCH11g0003 421 MobiDBLite consensus disorder prediction 399 421 - -
HCH11g0003 421 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0003 421 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524(InterPro)
HCH11g0003 421 Gene3D Transferase(Phosphotransferase) domain 1 165 374 - -
HCH11g0003 421 MobiDBLite consensus disorder prediction 29 50 - -
HCH11g0003 421 FunFam Probable serine/threonine-protein kinase PBL8 165 377 - -
HCH11g0003 421 CDD STKc_IRAK 88 362 - -
HCH11g0003 421 SUPERFAMILY Protein kinase-like (PK-like) 59 360 IPR011009 -
HCH11g0003 421 PANTHER OS01G0588500 PROTEIN-RELATED 61 363 IPR050823 -
HCH11g0003 421 FunFam Serine/threonine-protein kinase BIK1 49 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0194 HCH-Chr10:1591807 HCH11g0003 HCH-Chr11:604050 3.70E-122 dispersed
HCH10g0571 HCH-Chr10:4586761 HCH11g0003 HCH-Chr11:604050 2.50E-122 dispersed
HCH11g0003 HCH-Chr11:604050 HCH8g0556 HCH-Chr8:42335865 1.30E-124 dispersed
HCH11g0003 HCH-Chr11:604050 HCH8g0598 HCH-Chr8:42773162 4.40E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81018 PF07714 PK_Tyr_Ser-Thr 7.00E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0003 - - - 0.0