Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0014 ATGGTATCGTCTCAGATTTATGGCTTTAACAAGACTGCCAACAGCAAGGCTATCCAAACTCAGTTGCTTTTCCCCACGAAGACTACCGATGCCGGAACCATGGATTCCATTGAGATGGATTTCTCTGATGTATTTGGTCCCATACCACTCCAAGCTGCAACAGAATTGGACATTACGGATCTCGCCCTTCATGTCTGTCTGGAAGATTCAAGTGAGCTTATTTATGATGAGCCTGAAGTTATTTATAATGGATCACATTCTCTGGTTCGACCCTCTTCTTGTGTAAGCTTAAGTCAATCTCTTAAGCTAAGCAAGCTAACTATTCACGAGACTGAGGATTCGGAGGAACTTGTTACATACATCAGCAAGGAAATTGATAACAAACTTCAAGGATCTCCACGTGATTCTTTTACTGAGAAAACTCTCGGAGATGCAGACCGAAGTTTAATGAAAGTGCAGAGTGTAGGGATTGATGATTTTGAAGTTCTGAAGGTTGTTGGGCAGGGTGCATTTGCTAAGGTTTATCAGGTCAGAAGAAAGGGCACAGCAGAGATATATGCAATGAAGGTCATGCGTAAGGACAAGATAATGGAGAAGAATCATGCTGAATACATGAAAGCTGAGAGGGATATATTGTCAAAAACTGACCATCCCTTTATCGTCCAACTAAGATACTCCTTCCAAACAAAATATAGGCTGTATCTTGTTCTGGATTTTGTGAATGGTGGTCATCTTTTCTTTCAGCTCTACCACCATGGGCTTTTCAGAGAAGATCTTGCTCGTATTTATGCCGCTGAGATTGTTTCAGCAGTATCACACCTCCATGCAAACGGTATAATGCACAGGGATCTCAAACCTGAAAATATTCTAGTGGATGACCTTGGCCATGTTATGTTGACTGATTTTGGCCTGGCAAAACAGTTTGAAGAGAATACAAGATCAAATTCTATGTGTGGAACATTAGAATATATGCCGCCCGAAATTGTTCTGGGGAAAGGCCATGACAAAGCTGCCGATTGGTGGAGTGTGGGAATACTATTATTCGAAATGCTGACTGGGAAGCCTCCTTTTACCGGGAATCGGGAAAAAGTGCAGCAAAAGATAGTGAAGGACAAGATCAAGCTTCCAGCATTTTTGTCCAGTGAAGCACATTCTCTCTTAAAAGGGCTTCTCCAAAAGGACGTGAACAAGCGGTTGGGTAGTGGGCCGTTGGGAAGTGAGGAAATCAAGCGCCACAAGTGGTTCAAGCCAGTTAATTGGAAGAAATTGGAGAACCGGGAAATCCAACCGAGTTTTCGGCCTGAAGTGGCTGGGAAGCAGTGTGTGGCCAACTTTGAGAAGCGGTGGACTGATATGCCACTGGTTGATTCTCCGGTTGCCAGTCCTAAAACAGAAGGAAATCCCTTCACAGGGTTCAGCTATGTGAAACCTGGAGCCTCATTCCTGAAGAGGGATACGCCTATCTATTAG 1470 43.61 MVSSQIYGFNKTANSKAIQTQLLFPTKTTDAGTMDSIEMDFSDVFGPIPLQAATELDITDLALHVCLEDSSELIYDEPEVIYNGSHSLVRPSSCVSLSQSLKLSKLTIHETEDSEELVTYISKEIDNKLQGSPRDSFTEKTLGDADRSLMKVQSVGIDDFEVLKVVGQGAFAKVYQVRRKGTAEIYAMKVMRKDKIMEKNHAEYMKAERDILSKTDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYAAEIVSAVSHLHANGIMHRDLKPENILVDDLGHVMLTDFGLAKQFEENTRSNSMCGTLEYMPPEIVLGKGHDKAADWWSVGILLFEMLTGKPPFTGNREKVQQKIVKDKIKLPAFLSSEAHSLLKGLLQKDVNKRLGSGPLGSEEIKRHKWFKPVNWKKLENREIQPSFRPEVAGKQCVANFEKRWTDMPLVDSPVASPKTEGNPFTGFSYVKPGASFLKRDTPIY 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 661138 663325 + evm.model.ptg000018l.601 HCH11g0014 553481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0014 489 SMART serkin_6 160 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0014 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0014 489 Pfam Protein kinase domain 160 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0014 489 CDD STKc_AGC 166 415 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
HCH11g0014 489 ProSiteProfiles Protein kinase domain profile. 160 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0014 489 SUPERFAMILY Protein kinase-like (PK-like) 157 473 IPR011009 -
HCH11g0014 489 Pfam Protein kinase C terminal domain 436 474 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0014 489 FunFam Non-specific serine/threonine protein kinase 157 262 - -
HCH11g0014 489 SMART pkinase_C_6 416 476 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0014 489 PANTHER RIBOSOMAL PROTEIN S6 KINASE 127 479 - -
HCH11g0014 489 ProSitePatterns Protein kinases ATP-binding region signature. 166 189 IPR017441 GO:0005524(InterPro)
HCH11g0014 489 Gene3D Phosphorylase Kinase; domain 1 157 456 - -
HCH11g0014 489 Gene3D Transferase(Phosphotransferase) domain 1 240 434 - -
HCH11g0014 489 FunFam Non-specific serine/threonine protein kinase 240 434 - -
HCH11g0014 489 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 484 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0014 HCH-Chr11:661138 HCH8g1345 HCH-Chr8:48336948 2.10E-134 dispersed
HCH6g1609 HCH-Chr6:49234639 HCH11g0014 HCH-Chr11:661138 6.10E-33 dispersed
HCH11g0014 HCH-Chr11:661138 HCH7g0369 HCH-Chr7:2662668 1.80E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81019 PF00069 Pkinase 2.10E-74 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0014 K04688 - mdm:103423523 721.079