Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0019 ATGCTTTTTAACCAATTCCTTGTCATTCTTGTTGTTGTTTTTGTTGTAGCTCCTACTTGCATTTATTCTGTAGACACTGTGTTCAACGATGATGTCCTTGGCTTAATAGTTTTTAAAGCTGGTCTTCAAGATCCCATGAATAAACTTTCATCATGGAATGAAGATGATGAAAATCCCTGCAATTGGTTTGGTGTCAAATGTAATTCTGATTCCAACAGAGTCTCTGAACTTCTTCTTGATGGTTTCTCTTTATCTGGTCACATTGATCGTGGCCTTCTCAGATTACAATTTCTTCAAATTCTCTCTCTTTCCAACAATAACTTTACTGGTACCATTAACTCTGCTCTTTCTCATTTGGGTAATCTCCAAGTTCTTGATTTCAGTGATAATCGTCTTTCTGGTTCTATTCCTCCAGAGCTTTTCCAGCAATGTTCTTCTTTAAGAGTTATTTCATTTGCTAAAAACAATCTCACAGGACATATCCCTCCATCCTTGAGCTCTTGTTTTTCATTAGAAGTTGTCAACTTTTCATCTAACCATCTATCTGGGATATTGCCTACTGGAATCTGGTATTTGAGAGGACTTCAATCTCTTGATTTCTCTGACAATTTGCTTCAAGGCCAGATTCCTTTGGGTATCCAAAATTTGTATGATTTGAGACTTCTTAATTTACACAAGAATCGATTTTCTGGGAAGCTTCCTGGAGATATTGGTGGTTGCTTACTTTTGAAATCTATTGATTTTAGTCAGAACATCCTCTCTGGGGGTCTACCAGAATCAATGCAGATGCTCAGTTCATGCACTTACCTCAATTTACAAGGAAATTTTTTAATAGGAGAACTCCCACATTGGATTGGAGAGCTTAAATATCTTGAGACTTTGGATCTTTCTACCAATAACTTTTCAGGTCAGGTTCCGAGTTCATTAGGCAACCTTCAATTGTTGAAGAAATTAAACGTATCTGGGAACTATTTCACTGGAAACTTACCGGAGTCTATGAAAAATTGTATTGATCTTTTCAGTATTGATGCCAGCCATAATCAATTGACTGGCTATCTCCCTTCATGGATATTTAAGGCAGTTATGCCTAGCCTTCCAGCAGTTTCTTCCAACAGACTCGGAGATAACCTTTCGTATCCGTTGCCCACGTCGTCTCCAACCTCTTTTGAAGGTCTTCAAGTTTTGGATTTGTCTTCAAATGATTTCACTGGTCACATTCCGTCTAATGTTGGAGATCTTAGTACCTTGCAGTTGCTAAATATATCAAGAAACCATCTCATAGGTTCCATTCCAAGGAGCATTGGTGATTTGAAATCGGTATACGCTCTTGACTTAAGTGAGAATCGATTGAATGGAAGCATTCCTACTGAAATTGGAGGAGCAATCTCACTGAGGGAGTTGAGGCTGGAGAAGAACTTCCTTACTGGGAAGATTCCAATCCAGATTGACAAATGCTCGTTGTTAACATCATTGATGCTTTCTCAAAACAACCTCACAGGCTCAATTCCTGCTGCCATTGCAAATCTCTCCAATCTCCAATATGTTGACTTATCTTTCAACAAACTCTCTGGGAGCTTGCCTAAGGAGCTGACTAACCTTTCCCACCTCCTTTCCTTTAATGTCTCCCACAATCACCTTGAGGGAGAGCTTCCTGTAGGGGGCTTCTTCAACACTATATCTCCCTTGTCCGTATCAAATAATCCGTCTCTATGTGGTGCTATCGTCAATAGGTCCTGCCCCTCCGTTCATCCAAAACCAATCGTCCTAAACCCGAATTCTTCTGATACCAACCACAATTCTCCCTCGCACAAGCATCCTCATGAGATCATACTCAGTGTATCTTCCCTCATTGCTATTAGTGCAGCTTCCTTCATTTTGCTTGGTGTAGTAGCTGTCACTGTCCTCAATATCCGTGCAAGGTCTTCATTGTCCCGTTCTGCTGCTCCTCTTGCACTATCCGCTGGGGAAGAATTCAGCTGCTCCCAGAAAACTAATCCAGATTATGGAAAACTTGTCATGTTTTCTGGGGATGCAGACTTTGTAGTTGGCGCCCAAGCATTGCTAAACAAGGACTGTGAACTTGGTCGTGGTGGGTTTGGAGTTGTTTATAGAACAGCGCTTCGAGACGGGTGTTTAGTTGCAATCAAGAAGCTAACTGTCTCGGGTTTAATCAAGTCTCGAGAAGATTTTGAGAATGAAGTGAAGAAATTGGGACAGATAAGGCATCACAATCTTGTGGCACTCGAAGGATACTACTGGACAACTTCCTTGCAGCTCCTCATTTATGAATACATTCCTAATGGAAGTTTATATAAACATCTACATGATGGAGCTGGCAACAATTGTTTGTCTTGGCTGCAGAGGTTCAATATTGTTATTGGGATGGCGAAAGGTTTGGCTTATTTGCACCATAATGACATTATTCATTACAACTTGAAGTCGACAAATGTTTTGATAGACAGTTCTGGTAAACCAAAGGTGGGGGACTATGGCTTGGCGAGGTTGTTGCCAATGTTAGACCGTTGCATCTTAAGCAGCAAAATCCAGAGTGCTTTGGGGTACATGGCTCCAGAATTTGCCTGTAAGACAGTGAATATAACCGAAAAATGTGATGTGTATGGTTTTGGCATCTTGGTTTTGGAAGTGGTGACTGGTAAAAGGCCTGTGGAATACATGGAAGATGATGTTATAGTGCTCTGTGATATGGTGAGGGTGGCCTTGGATGAAGGCACAGTGGAGCACTGTGTCGATGAGAGGCTCCGAGGTAAATTCCGAATCGAAGAGGCGGTTCCTGTAATGAAATTGGGTTTGATATGTGCATCTCAAGTACCATCAAACAGGCCAGATATGAATGAGGTTGTCAATATATTAGAGTTGATCCAATCCCCCTCTGAAGTTCATGAAGAATTGGAATGA 2916 40.98 MLFNQFLVILVVVFVVAPTCIYSVDTVFNDDVLGLIVFKAGLQDPMNKLSSWNEDDENPCNWFGVKCNSDSNRVSELLLDGFSLSGHIDRGLLRLQFLQILSLSNNNFTGTINSALSHLGNLQVLDFSDNRLSGSIPPELFQQCSSLRVISFAKNNLTGHIPPSLSSCFSLEVVNFSSNHLSGILPTGIWYLRGLQSLDFSDNLLQGQIPLGIQNLYDLRLLNLHKNRFSGKLPGDIGGCLLLKSIDFSQNILSGGLPESMQMLSSCTYLNLQGNFLIGELPHWIGELKYLETLDLSTNNFSGQVPSSLGNLQLLKKLNVSGNYFTGNLPESMKNCIDLFSIDASHNQLTGYLPSWIFKAVMPSLPAVSSNRLGDNLSYPLPTSSPTSFEGLQVLDLSSNDFTGHIPSNVGDLSTLQLLNISRNHLIGSIPRSIGDLKSVYALDLSENRLNGSIPTEIGGAISLRELRLEKNFLTGKIPIQIDKCSLLTSLMLSQNNLTGSIPAAIANLSNLQYVDLSFNKLSGSLPKELTNLSHLLSFNVSHNHLEGELPVGGFFNTISPLSVSNNPSLCGAIVNRSCPSVHPKPIVLNPNSSDTNHNSPSHKHPHEIILSVSSLIAISAASFILLGVVAVTVLNIRARSSLSRSAAPLALSAGEEFSCSQKTNPDYGKLVMFSGDADFVVGAQALLNKDCELGRGGFGVVYRTALRDGCLVAIKKLTVSGLIKSREDFENEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEYIPNGSLYKHLHDGAGNNCLSWLQRFNIVIGMAKGLAYLHHNDIIHYNLKSTNVLIDSSGKPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVNITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRVALDEGTVEHCVDERLRGKFRIEEAVPVMKLGLICASQVPSNRPDMNEVVNILELIQSPSEVHEELE 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 678996 682170 + evm.model.ptg000018l.596 HCH11g0019 553486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0019 971 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 765 966 - -
HCH11g0019 971 SUPERFAMILY Protein kinase-like (PK-like) 692 960 IPR011009 -
HCH11g0019 971 SMART LRR_typ_2 437 461 IPR003591 -
HCH11g0019 971 SMART LRR_typ_2 509 532 IPR003591 -
HCH11g0019 971 SMART LRR_typ_2 389 413 IPR003591 -
HCH11g0019 971 SMART LRR_typ_2 533 557 IPR003591 -
HCH11g0019 971 SMART LRR_typ_2 288 312 IPR003591 -
HCH11g0019 971 SMART LRR_typ_2 216 240 IPR003591 -
HCH11g0019 971 SMART LRR_typ_2 95 118 IPR003591 -
HCH11g0019 971 SMART LRR_typ_2 192 215 IPR003591 -
HCH11g0019 971 SMART LRR_typ_2 119 143 IPR003591 -
HCH11g0019 971 Gene3D Ribonuclease Inhibitor 29 187 IPR032675 -
HCH11g0019 971 ProSiteProfiles Protein kinase domain profile. 688 970 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0019 971 Gene3D Ribonuclease Inhibitor 188 241 IPR032675 -
HCH11g0019 971 Gene3D Ribonuclease Inhibitor 242 310 IPR032675 -
HCH11g0019 971 Gene3D Ribonuclease Inhibitor 311 585 IPR032675 -
HCH11g0019 971 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524(InterPro)
HCH11g0019 971 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 308 583 - -
HCH11g0019 971 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515(InterPro)
HCH11g0019 971 Pfam Leucine Rich Repeat 195 216 IPR001611 GO:0005515(InterPro)
HCH11g0019 971 Pfam Leucine Rich Repeat 315 336 IPR001611 GO:0005515(InterPro)
HCH11g0019 971 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515(InterPro)
HCH11g0019 971 Pfam Leucine Rich Repeat 291 312 IPR001611 GO:0005515(InterPro)
HCH11g0019 971 Pfam Leucine Rich Repeat 268 288 IPR001611 GO:0005515(InterPro)
HCH11g0019 971 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 682 764 - -
HCH11g0019 971 Gene3D Transferase(Phosphotransferase) domain 1 765 970 - -
HCH11g0019 971 SUPERFAMILY L domain-like 295 571 - -
HCH11g0019 971 Pfam Leucine rich repeat 391 450 IPR001611 GO:0005515(InterPro)
HCH11g0019 971 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
HCH11g0019 971 Pfam Leucine rich repeat 463 522 IPR001611 GO:0005515(InterPro)
HCH11g0019 971 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
HCH11g0019 971 Pfam Protein tyrosine and serine/threonine kinase 690 956 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0019 971 ProSiteProfiles Leucine-rich repeat profile. 121 143 IPR001611 GO:0005515(InterPro)
HCH11g0019 971 FunFam Inactive leucine-rich repeat receptor-like protein kinase 187 283 - -
HCH11g0019 971 SUPERFAMILY L domain-like 45 359 - -
HCH11g0019 971 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 25 958 IPR050647 -
HCH11g0019 971 Gene3D Phosphorylase Kinase; domain 1 677 764 - -
HCH11g0019 971 FunFam Leucine-rich repeat receptor-like protein kinase 28 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0019 HCH-Chr11:678996 HCH1g0270 HCH-Chr1:44202653 6.40E-26 dispersed
HCH11g0019 HCH-Chr11:678996 HCH13g0600 HCH-Chr13:4595342 2.60E-176 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81020 PF07714 PK_Tyr_Ser-Thr 1.60E-40 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0019 - - - 0.0