Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0024 | ATGGCTTCAAGAACTTGCATGAATGTATTGTGTGGAGCATCATCTTCTACTTCTACTTCTACTAATTGGTTCAAAGGTTGGGCTCTACGATCTGGCGATTTTGCTTCTCTCTGCGATAAGTGCGGGTCTGCATACGAGCAATCGATTTTCTGTGATGTGTTTCACTTAAAAGACTCTGGTTGGAGGGAGTGTACGTCATGTGGTAAGCGTCTCCATTGTGGATGCATTGCTTCCAAGTTTCTGATCGAGCTTCATGATAGTGGTGGGGTGATCTGCATAAACTGTGCCAAAAAATTAGGATTTCATACTACTGCTACGGAAGAAAAGCCCAATGAATTTAGCACACCAAAGGTTCAAAGTTCTGGTGAACTTCCATCCTTTTTAGTGGAAGATGGTGGCACTGATGGAATAAGGCTTATTCAATCAAGAAATCAGATAGAGGGAAATGAGCTTAGGCACTCACTCCAATCTCAATACAATAACAAGAATGGATCCTTGATGCAAATGAAACATGAGGAAAATTTTCCTTCAGTTAAAGATGTTGGGTACATTTGTTCCTTGGAATTCAATCAGGTGGCCAACGGATCGAATGAAGCTGCTGAACAGGAAATCTGCAAAGCAGACCATGGAACAAATTTTATGTATGATTCACTGACTCAGACAAGTTTGAGTGTAAATTTGGGTTGTGGAAATTCGAGCCCTCTTACAGGTGTTTCTGTTGACGAGAAGGAGGATAGCAAGTCATCCTCCCCTTTGCTGCTTGGCCCTAGATCGCGTCAGCTTATTCCAAAGCCCCCACGTTCAGTTTTTAATGCAAGCTTTGAGCCAAATGCTAGCCTGGTTTCACAGATACGTGTTGCAAGGCCACCTGCTGAAGGGAGGGGGCGGAATCAGTTGCTTCCTCGTTACTGGCCCAGGATCACTGACCAGGAATTGCAGCAGATATCTGGAGCTTCAAATTCCACTATTGTGCCATTATTTGAAAAGATGCTCAGTGCCAGTGATGCTGGTCGCATAGGTCGTCTGGTTGTCCCAAAAGCGTGTGCTGAAGCATATTTCCCTCCTATCTCTCAGCCAGAGGGTCTTCCAATAAGAATTCAAGATGTCAAGGGAAAAGAGTGGGTGTTTCAATTCAGGTTTTGGCCCAACAATAACAGTAGGATGTATGTTTTGGAAGGTGTAACTCCCTGCATACAATCCATGCAGCTGCAAGCTGGAGATACTGTGACATTTAGCCGTATGGATCCTGAAGGCAAACTTATTATGGGATTTCGTAAAGCATCAAGTTCTGTAATGCAGGATACCCATCCATCTACTCTTTCTAGTGGACCTCATTCGAGTGAATTATTTTCAAGCGTTCTTGAGAATCTTCCTATCTTAAGTGGTCATTCTAGCCTTCTCCAGTCCTTAAAAGGGAATGCAGATCTCCAGCTCAATGTATTGCCTGGATACTTCAATCAACCTGGTGCTGATATGAGCTGGCAGAAAGCTGAGAAGCACGATGATAAATCAAGGGAGAGCTTGCTCCTGTCTTCAATGCTGGTACCAGAGAGGAAGAAAAGTCGAAACATTGGGTCCAAAAGTAAAAGGTTGGTCATTGATTCTCAAGATGCTCTGGAGCTGAAACTCACATGGGAAGAGGTGCAGGATTTGCTTCGTCCACCACCCACTGTCAAACCTAGCAAGTTCATGGTTGAGGACCATGAATTTGAAGAATATGAAGAACCTCCAGTTTTTGGGAAGAAGAGCATTTTTGTGGTCTGTCCAACTCGGGGTCAAGAGCAATGGACCCAGTGTGACACTTGCTCTAAATGGCGAAGATTGCCAGTTGATGTACTTCTGCCCTCCAAGTGGATATGTATGGAAAACGTTTGGGATCAAAGCAGGGTTTCGTGTTCTACACCTGAAGAATTAACATCAAAGGAACTGGACAATCTTCTGAGATTGAATAAGGAATTCAAAAGGCAGAGAACTATGCCTTTCAATGGACCAATCCAACATCATGAATCCTCTGGTCTGGATGCTCTGGCTAATGCTGCAATTTTAGGAGATAATGTCGGTGATCCAGGCACTGCATCAGTTGCAACTACAACAAGGCATCCCAGGCATCGTCCAGGTTGCTCATGCATTGTGTGCATCCAACCACCCAGTGGAAAGGGAAAGCACAAACCTACATGCACATGCAATGTTTGTATGACAGTTAAACGCCGATTTAAAACTCTAATGATGCGCAAGAAGAAGCGGCAATCAGAGCGTGAAGCTGAAATTGCTCAAAAGAACCAGCTTAAGTGGGGCTCTAGAGATGAAACTGAATTGGAAAATACATCCAGACAAGTATCCCTGAACCTTGGTCCCTCTGAAAATGAAGCCCAACAGACAAATGATTCTAGGAACCAAAGTAATTTGGTTGAAACTGGCAAGGATCAATTAGATTTAAATTGCCATCCTGATCAAGGAATTGAAGTACAAGGGATGTCAAACCGAGTGAGCATGGTGAGTCTTATTCAAATTGCAAGCTTGCCATTAGAGACGTATTTGAAGCAGAATGGCCTCACAAGTCTGTTATCAGAACCACAGGTTAGTTCGGCATCACATGTGCCACCGCATGGTGCGAATGAGGTTGAAGGAGCTTTAAATGATGATGGATGTTTTGCCTCCACTGCTGAAGATCAAGAAAGTGACGGAGAAGAAAATTGCGAACAAGATCAAGGTTGA | 2715 | 43.76 | MASRTCMNVLCGASSSTSTSTNWFKGWALRSGDFASLCDKCGSAYEQSIFCDVFHLKDSGWRECTSCGKRLHCGCIASKFLIELHDSGGVICINCAKKLGFHTTATEEKPNEFSTPKVQSSGELPSFLVEDGGTDGIRLIQSRNQIEGNELRHSLQSQYNNKNGSLMQMKHEENFPSVKDVGYICSLEFNQVANGSNEAAEQEICKADHGTNFMYDSLTQTSLSVNLGCGNSSPLTGVSVDEKEDSKSSSPLLLGPRSRQLIPKPPRSVFNASFEPNASLVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGASNSTIVPLFEKMLSASDAGRIGRLVVPKACAEAYFPPISQPEGLPIRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKASSSVMQDTHPSTLSSGPHSSELFSSVLENLPILSGHSSLLQSLKGNADLQLNVLPGYFNQPGADMSWQKAEKHDDKSRESLLLSSMLVPERKKSRNIGSKSKRLVIDSQDALELKLTWEEVQDLLRPPPTVKPSKFMVEDHEFEEYEEPPVFGKKSIFVVCPTRGQEQWTQCDTCSKWRRLPVDVLLPSKWICMENVWDQSRVSCSTPEELTSKELDNLLRLNKEFKRQRTMPFNGPIQHHESSGLDALANAAILGDNVGDPGTASVATTTRHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQLKWGSRDETELENTSRQVSLNLGPSENEAQQTNDSRNQSNLVETGKDQLDLNCHPDQGIEVQGMSNRVSMVSLIQIASLPLETYLKQNGLTSLLSEPQVSSASHVPPHGANEVEGALNDDGCFASTAEDQESDGEENCEQDQG | 904 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 694656 | 699922 | + | evm.model.ptg000018l.591 | HCH11g0024 | 553491 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0024 | 904 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 | 1 | 863 | - | - | |
HCH11g0024 | 904 | MobiDBLite | consensus disorder prediction | 746 | 774 | - | - | |
HCH11g0024 | 904 | Pfam | CW-type Zinc Finger | 595 | 637 | IPR011124 | GO:0008270(InterPro) | |
HCH11g0024 | 904 | Gene3D | - | 593 | 649 | - | - | |
HCH11g0024 | 904 | SMART | B3_2 | 327 | 428 | IPR003340 | GO:0003677(InterPro) | |
HCH11g0024 | 904 | MobiDBLite | consensus disorder prediction | 859 | 904 | - | - | |
HCH11g0024 | 904 | CDD | B3_DNA | 325 | 426 | IPR003340 | GO:0003677(InterPro) | |
HCH11g0024 | 904 | ProSiteProfiles | Zinc finger CW-type profile. | 590 | 640 | IPR011124 | GO:0008270(InterPro) | |
HCH11g0024 | 904 | SUPERFAMILY | DNA-binding pseudobarrel domain | 324 | 427 | IPR015300 | - | |
HCH11g0024 | 904 | MobiDBLite | consensus disorder prediction | 775 | 800 | - | - | |
HCH11g0024 | 904 | Gene3D | - | 305 | 431 | IPR015300 | - | |
HCH11g0024 | 904 | MobiDBLite | consensus disorder prediction | 237 | 258 | - | - | |
HCH11g0024 | 904 | MobiDBLite | consensus disorder prediction | 742 | 800 | - | - | |
HCH11g0024 | 904 | FunFam | B3 domain-containing transcription repressor VAL1 | 305 | 432 | - | - | |
HCH11g0024 | 904 | ProSiteProfiles | B3 DNA-binding domain profile. | 327 | 428 | IPR003340 | GO:0003677(InterPro) | |
HCH11g0024 | 904 | Pfam | B3 DNA binding domain | 327 | 426 | IPR003340 | GO:0003677(InterPro) | |
HCH11g0024 | 904 | MobiDBLite | consensus disorder prediction | 890 | 904 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0024 | HCH-Chr11:694656 | HCH3g1507 | HCH-Chr3:53039139 | 6.60E-227 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32515 | PF02362 | B3 | 2.20E-15 | CL0405 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0024 | K09287 | - | csv:101213503 | 1459.12 |