Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0024 ATGGCTTCAAGAACTTGCATGAATGTATTGTGTGGAGCATCATCTTCTACTTCTACTTCTACTAATTGGTTCAAAGGTTGGGCTCTACGATCTGGCGATTTTGCTTCTCTCTGCGATAAGTGCGGGTCTGCATACGAGCAATCGATTTTCTGTGATGTGTTTCACTTAAAAGACTCTGGTTGGAGGGAGTGTACGTCATGTGGTAAGCGTCTCCATTGTGGATGCATTGCTTCCAAGTTTCTGATCGAGCTTCATGATAGTGGTGGGGTGATCTGCATAAACTGTGCCAAAAAATTAGGATTTCATACTACTGCTACGGAAGAAAAGCCCAATGAATTTAGCACACCAAAGGTTCAAAGTTCTGGTGAACTTCCATCCTTTTTAGTGGAAGATGGTGGCACTGATGGAATAAGGCTTATTCAATCAAGAAATCAGATAGAGGGAAATGAGCTTAGGCACTCACTCCAATCTCAATACAATAACAAGAATGGATCCTTGATGCAAATGAAACATGAGGAAAATTTTCCTTCAGTTAAAGATGTTGGGTACATTTGTTCCTTGGAATTCAATCAGGTGGCCAACGGATCGAATGAAGCTGCTGAACAGGAAATCTGCAAAGCAGACCATGGAACAAATTTTATGTATGATTCACTGACTCAGACAAGTTTGAGTGTAAATTTGGGTTGTGGAAATTCGAGCCCTCTTACAGGTGTTTCTGTTGACGAGAAGGAGGATAGCAAGTCATCCTCCCCTTTGCTGCTTGGCCCTAGATCGCGTCAGCTTATTCCAAAGCCCCCACGTTCAGTTTTTAATGCAAGCTTTGAGCCAAATGCTAGCCTGGTTTCACAGATACGTGTTGCAAGGCCACCTGCTGAAGGGAGGGGGCGGAATCAGTTGCTTCCTCGTTACTGGCCCAGGATCACTGACCAGGAATTGCAGCAGATATCTGGAGCTTCAAATTCCACTATTGTGCCATTATTTGAAAAGATGCTCAGTGCCAGTGATGCTGGTCGCATAGGTCGTCTGGTTGTCCCAAAAGCGTGTGCTGAAGCATATTTCCCTCCTATCTCTCAGCCAGAGGGTCTTCCAATAAGAATTCAAGATGTCAAGGGAAAAGAGTGGGTGTTTCAATTCAGGTTTTGGCCCAACAATAACAGTAGGATGTATGTTTTGGAAGGTGTAACTCCCTGCATACAATCCATGCAGCTGCAAGCTGGAGATACTGTGACATTTAGCCGTATGGATCCTGAAGGCAAACTTATTATGGGATTTCGTAAAGCATCAAGTTCTGTAATGCAGGATACCCATCCATCTACTCTTTCTAGTGGACCTCATTCGAGTGAATTATTTTCAAGCGTTCTTGAGAATCTTCCTATCTTAAGTGGTCATTCTAGCCTTCTCCAGTCCTTAAAAGGGAATGCAGATCTCCAGCTCAATGTATTGCCTGGATACTTCAATCAACCTGGTGCTGATATGAGCTGGCAGAAAGCTGAGAAGCACGATGATAAATCAAGGGAGAGCTTGCTCCTGTCTTCAATGCTGGTACCAGAGAGGAAGAAAAGTCGAAACATTGGGTCCAAAAGTAAAAGGTTGGTCATTGATTCTCAAGATGCTCTGGAGCTGAAACTCACATGGGAAGAGGTGCAGGATTTGCTTCGTCCACCACCCACTGTCAAACCTAGCAAGTTCATGGTTGAGGACCATGAATTTGAAGAATATGAAGAACCTCCAGTTTTTGGGAAGAAGAGCATTTTTGTGGTCTGTCCAACTCGGGGTCAAGAGCAATGGACCCAGTGTGACACTTGCTCTAAATGGCGAAGATTGCCAGTTGATGTACTTCTGCCCTCCAAGTGGATATGTATGGAAAACGTTTGGGATCAAAGCAGGGTTTCGTGTTCTACACCTGAAGAATTAACATCAAAGGAACTGGACAATCTTCTGAGATTGAATAAGGAATTCAAAAGGCAGAGAACTATGCCTTTCAATGGACCAATCCAACATCATGAATCCTCTGGTCTGGATGCTCTGGCTAATGCTGCAATTTTAGGAGATAATGTCGGTGATCCAGGCACTGCATCAGTTGCAACTACAACAAGGCATCCCAGGCATCGTCCAGGTTGCTCATGCATTGTGTGCATCCAACCACCCAGTGGAAAGGGAAAGCACAAACCTACATGCACATGCAATGTTTGTATGACAGTTAAACGCCGATTTAAAACTCTAATGATGCGCAAGAAGAAGCGGCAATCAGAGCGTGAAGCTGAAATTGCTCAAAAGAACCAGCTTAAGTGGGGCTCTAGAGATGAAACTGAATTGGAAAATACATCCAGACAAGTATCCCTGAACCTTGGTCCCTCTGAAAATGAAGCCCAACAGACAAATGATTCTAGGAACCAAAGTAATTTGGTTGAAACTGGCAAGGATCAATTAGATTTAAATTGCCATCCTGATCAAGGAATTGAAGTACAAGGGATGTCAAACCGAGTGAGCATGGTGAGTCTTATTCAAATTGCAAGCTTGCCATTAGAGACGTATTTGAAGCAGAATGGCCTCACAAGTCTGTTATCAGAACCACAGGTTAGTTCGGCATCACATGTGCCACCGCATGGTGCGAATGAGGTTGAAGGAGCTTTAAATGATGATGGATGTTTTGCCTCCACTGCTGAAGATCAAGAAAGTGACGGAGAAGAAAATTGCGAACAAGATCAAGGTTGA 2715 43.76 MASRTCMNVLCGASSSTSTSTNWFKGWALRSGDFASLCDKCGSAYEQSIFCDVFHLKDSGWRECTSCGKRLHCGCIASKFLIELHDSGGVICINCAKKLGFHTTATEEKPNEFSTPKVQSSGELPSFLVEDGGTDGIRLIQSRNQIEGNELRHSLQSQYNNKNGSLMQMKHEENFPSVKDVGYICSLEFNQVANGSNEAAEQEICKADHGTNFMYDSLTQTSLSVNLGCGNSSPLTGVSVDEKEDSKSSSPLLLGPRSRQLIPKPPRSVFNASFEPNASLVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGASNSTIVPLFEKMLSASDAGRIGRLVVPKACAEAYFPPISQPEGLPIRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKASSSVMQDTHPSTLSSGPHSSELFSSVLENLPILSGHSSLLQSLKGNADLQLNVLPGYFNQPGADMSWQKAEKHDDKSRESLLLSSMLVPERKKSRNIGSKSKRLVIDSQDALELKLTWEEVQDLLRPPPTVKPSKFMVEDHEFEEYEEPPVFGKKSIFVVCPTRGQEQWTQCDTCSKWRRLPVDVLLPSKWICMENVWDQSRVSCSTPEELTSKELDNLLRLNKEFKRQRTMPFNGPIQHHESSGLDALANAAILGDNVGDPGTASVATTTRHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQLKWGSRDETELENTSRQVSLNLGPSENEAQQTNDSRNQSNLVETGKDQLDLNCHPDQGIEVQGMSNRVSMVSLIQIASLPLETYLKQNGLTSLLSEPQVSSASHVPPHGANEVEGALNDDGCFASTAEDQESDGEENCEQDQG 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 694656 699922 + evm.model.ptg000018l.591 HCH11g0024 553491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0024 904 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 1 863 - -
HCH11g0024 904 MobiDBLite consensus disorder prediction 746 774 - -
HCH11g0024 904 Pfam CW-type Zinc Finger 595 637 IPR011124 GO:0008270(InterPro)
HCH11g0024 904 Gene3D - 593 649 - -
HCH11g0024 904 SMART B3_2 327 428 IPR003340 GO:0003677(InterPro)
HCH11g0024 904 MobiDBLite consensus disorder prediction 859 904 - -
HCH11g0024 904 CDD B3_DNA 325 426 IPR003340 GO:0003677(InterPro)
HCH11g0024 904 ProSiteProfiles Zinc finger CW-type profile. 590 640 IPR011124 GO:0008270(InterPro)
HCH11g0024 904 SUPERFAMILY DNA-binding pseudobarrel domain 324 427 IPR015300 -
HCH11g0024 904 MobiDBLite consensus disorder prediction 775 800 - -
HCH11g0024 904 Gene3D - 305 431 IPR015300 -
HCH11g0024 904 MobiDBLite consensus disorder prediction 237 258 - -
HCH11g0024 904 MobiDBLite consensus disorder prediction 742 800 - -
HCH11g0024 904 FunFam B3 domain-containing transcription repressor VAL1 305 432 - -
HCH11g0024 904 ProSiteProfiles B3 DNA-binding domain profile. 327 428 IPR003340 GO:0003677(InterPro)
HCH11g0024 904 Pfam B3 DNA binding domain 327 426 IPR003340 GO:0003677(InterPro)
HCH11g0024 904 MobiDBLite consensus disorder prediction 890 904 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0024 HCH-Chr11:694656 HCH3g1507 HCH-Chr3:53039139 6.60E-227 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32515 PF02362 B3 2.20E-15 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0024 K09287 - csv:101213503 1459.12