Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0030 ATGAGTTGTAACGATAAGAATAGAGGGGGAGATGATAGGGAAGTTGAGCAGATAGTTTTGAGGAAGTCTGTTGAGTCGGACCCTAAATCAGTTATTCGGAATGGATCTATAACGGCTCAACAGCTGACGATCGATGATAATCTTCTAGTTGATCCTAAATTACTGTTTATTGGATCGAAGATCGGTGAGGGAGCTCATGGGAAAGTTTACGAAGGCAGATATCGGGATCAAATTGTTGCCATCAAAGTTCTCCACCGAGGAAGTACTCTAGAAGAAAGAGCATCGCTTGAGGATCGTTTTGCACGTGAAGTTAATATGATGTCTCGAGTAAAACATGAAAATCTTGTCAAGTTCATTGGAGCTTGTAAAGATCCTCTAATGGTGATAGTTACAGAGCTATTACCAGGAATGTCACTTCGGAAGTATTTGATGAATAATCGTAAACAACAGTTGGACCCACGGGTGGCCATTAACTTTGCATTGGATATTGCACGTGCTATGGATTGTCTACATGCAAATGGGATAATACATAGAGATCTGAAACCTGACAATTTGTTACTTACGGCGAATCATAGGTCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAAACTGTGACTGAGATGATGACTGCAGAAACAGGGACTTACCGCTGGATGGCTCCTGAGTTGTACAGCACCGTGACACTGCGCCAGGGAGAGAAGAAGCATTACAATAACAAGGTTGATGTATACAGCTTTGGAATTGTCTTATGGGAACTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATCTGCAAGCTGCATATGCTGCTGCTTTCAAGCAAGAGAGACCTAGTATTCCAGAGGATATATCTCCTGACCTAGCATTTATTGTACAGTCATGTTGGGTCGAAGATCCTAACATGAGGCCCAGCTTCAGCCAGATCATCCGCATGCTCAATTCATTTCTATTTACACTTCCACCCCCTTCACCATCTTCACCAGCATCTGACACAACAGAGGCAGCAACAACTAGTAACGGTGCTATTACCGAGTTTTCTTCTCGTGCAAGAGGAAAGTTCGGATTCCTTCGCCAACTATTTGCTGCTAAGAGGGCTAAGAACTCGCAATAA 1122 43.23 MSCNDKNRGGDDREVEQIVLRKSVESDPKSVIRNGSITAQQLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYRDQIVAIKVLHRGSTLEERASLEDRFAREVNMMSRVKHENLVKFIGACKDPLMVIVTELLPGMSLRKYLMNNRKQQLDPRVAINFALDIARAMDCLHANGIIHRDLKPDNLLLTANHRSVKLADFGLAREETVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPEDISPDLAFIVQSCWVEDPNMRPSFSQIIRMLNSFLFTLPPPSPSSPASDTTEAATTSNGAITEFSSRARGKFGFLRQLFAAKRAKNSQ 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 748463 751362 - evm.model.ptg000018l.585 HCH11g0030 553497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0030 373 Gene3D Phosphorylase Kinase; domain 1 43 134 - -
HCH11g0030 373 CDD STKc_MAP3K-like 61 316 - -
HCH11g0030 373 Gene3D Transferase(Phosphotransferase) domain 1 138 343 - -
HCH11g0030 373 PRINTS Tyrosine kinase catalytic domain signature 131 144 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0030 373 PRINTS Tyrosine kinase catalytic domain signature 169 187 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0030 373 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0030 373 PRINTS Tyrosine kinase catalytic domain signature 287 309 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0030 373 Pfam Protein tyrosine and serine/threonine kinase 57 316 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0030 373 ProSitePatterns Protein kinases ATP-binding region signature. 61 82 IPR017441 GO:0005524(InterPro)
HCH11g0030 373 FunFam Kinase suppressor of Ras 1 44 134 - -
HCH11g0030 373 SUPERFAMILY Protein kinase-like (PK-like) 54 334 IPR011009 -
HCH11g0030 373 MobiDBLite consensus disorder prediction 332 346 - -
HCH11g0030 373 FunFam serine/threonine-protein kinase HT1 136 337 - -
HCH11g0030 373 SMART serkin_6 55 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0030 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0030 373 ProSiteProfiles Protein kinase domain profile. 55 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0030 373 PANTHER SERINE-THREONINE PROTEIN KINASE 49 317 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH11g0030 373 MobiDBLite consensus disorder prediction 326 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0030 HCH-Chr11:748463 HCH9g0113 HCH-Chr9:592760 1.50E-113 dispersed
HCH11g0030 HCH-Chr11:748463 HCH8g1427 HCH-Chr8:48871440 4.70E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81022 PF07714 PK_Tyr_Ser-Thr 1.80E-61 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0030 - - - 0.0