Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0050 ATGTCTTTCTCTTTCGAGACAACTTCTTTAACTGAGTTTCTTTCCAATAATAATAATACTATGAACCAAGAGATGTGTCCAATCAATGGTGGATCTTCTGATAATTTTGGAATGGAAGTTCCTAAATTCAAGACACTTCCATTTCCGTCTCCTTCATTTCCCATTTCTCCATTATCAGCTTTTTCTTCTGGTTTAACCTCCACTGAGCTTTTGATCAATTCCTCTCTTCTCTCTAATGGTGTTTTTGGTACGGAAGGTTTTGACTGGAGAAATGAATATAACGATGTGCCAGAAATGAAGGAAGATTTGAAGTTTTTTCAGCCTTTTTCTTCTTCTTCTTCTTCTAACATGATTCCATTGGAAGAATCAGCGGAAGAAAAGAAACAGACATCATGGGATATAAACAAAGGGAATAATAATTTCTCTTGTGAGAAAAGTGAGATTATGAGTAATCAAATCCCAGTTCATTATTCTCAGCAAAAATCAGATTTTGATGGATATAATTGGAGAAAATATGGACAAAAACAAGTCAAAGGAAGTGAAAATCCTCGTAGTTATTACAAGTGTACACATCCAACTTGTCCTACAAAGAAGAAAGTTGAAAGATCTTTACAAGGACAGATTACTGAGATTGTTTACAAAGGAAGTCATAACCATCCTAAGCCTCAGTCCACAAGACGATCTACCACCTCTTCTTCTTCCGTTTTCGATCACTCCGCCGCACCCCTCCCGGCCTATGACTCTGTCTTATTGCCGGACGATTCCTCGGTCTCGGTCGGAGATGATGATCTTGAACCCAATTCTCCCTTTAGTAATCATACTGGAGAAGATAATGAGAATGAACCAGAAGCTAAAAGATGGAAAGGAGAAAATGAAAGTGAGGGATTCTCTGCTCCTGGAAGCAGAACAGTGAAGGAGCCAAGAATTGTAGTTCAAACAACAAGTGAAATTGACATATTAGATGATGGCTATAGATGGAGGAAATATGGACAAAAAGTTGTCAAAGGGAATCCCAATCCAAGGAGCTACTATAAATGCACATCTTTAGGTTGTCCAGTGAGGAAACATGTTGAGAGGGCAGCCAACGACATGAGGGCTGTGATCACCACCTATGAAGGCAAACACAACCACGAAGTTCCAGCGGCACGAGGCGGCAGTGGTGGCGGTTATAATCGACCTTTACCCGCCAATATCCCGTTACCGGTGAGGCCCTCACCGGTAGTCAGTCATTCTTTCCCCATAAATTTCCCTGATTCCATGCAGCCAACAAGGCTGCCCATATCAGGAAATGAAGCACAGGCACCATTTGTTTATCAAACATCACAGAGAGCTCCAGCTAGCTTTCAAGTTATGGGATATGGAAATCACAATGGATTCATTGCCAAGGAAGAACTGAAAGATGATCTATTCCTTGACTCATTTCTTTCTTAG 1431 40.53 MSFSFETTSLTEFLSNNNNTMNQEMCPINGGSSDNFGMEVPKFKTLPFPSPSFPISPLSAFSSGLTSTELLINSSLLSNGVFGTEGFDWRNEYNDVPEMKEDLKFFQPFSSSSSSNMIPLEESAEEKKQTSWDINKGNNNFSCEKSEIMSNQIPVHYSQQKSDFDGYNWRKYGQKQVKGSENPRSYYKCTHPTCPTKKKVERSLQGQITEIVYKGSHNHPKPQSTRRSTTSSSSVFDHSAAPLPAYDSVLLPDDSSVSVGDDDLEPNSPFSNHTGEDNENEPEAKRWKGENESEGFSAPGSRTVKEPRIVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHVERAANDMRAVITTYEGKHNHEVPAARGGSGGGYNRPLPANIPLPVRPSPVVSHSFPINFPDSMQPTRLPISGNEAQAPFVYQTSQRAPASFQVMGYGNHNGFIAKEELKDDLFLDSFLS 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 920465 922613 + evm.model.ptg000018l.565 HCH11g0050 553517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0050 476 MobiDBLite consensus disorder prediction 261 275 - -
HCH11g0050 476 MobiDBLite consensus disorder prediction 218 238 - -
HCH11g0050 476 MobiDBLite consensus disorder prediction 276 292 - -
HCH11g0050 476 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 114 382 IPR044810 GO:0003700(InterPro)
HCH11g0050 476 SMART WRKY_cls 320 379 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0050 476 SMART WRKY_cls 163 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0050 476 ProSiteProfiles WRKY domain profile. 315 380 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0050 476 FunFam WRKY transcription factor 33 307 373 - -
HCH11g0050 476 Gene3D WRKY domain 150 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0050 476 FunFam WRKY transcription factor 151 223 - -
HCH11g0050 476 MobiDBLite consensus disorder prediction 212 303 - -
HCH11g0050 476 SUPERFAMILY WRKY DNA-binding domain 160 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0050 476 Gene3D WRKY domain 307 373 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0050 476 SUPERFAMILY WRKY DNA-binding domain 312 380 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0050 476 Pfam WRKY DNA -binding domain 321 378 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0050 476 Pfam WRKY DNA -binding domain 165 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0050 476 ProSiteProfiles WRKY domain profile. 158 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0050 HCH-Chr11:920465 HCH3g1486 HCH-Chr3:52888217 9.20E-95 dispersed
HCH11g0050 HCH-Chr11:920465 HCH2g0990 HCH-Chr2:53176155 2.40E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32517 PF03106 WRKY 2.40E-25 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0050 K13424 - csv:101205651 456.062