Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0050 | ATGTCTTTCTCTTTCGAGACAACTTCTTTAACTGAGTTTCTTTCCAATAATAATAATACTATGAACCAAGAGATGTGTCCAATCAATGGTGGATCTTCTGATAATTTTGGAATGGAAGTTCCTAAATTCAAGACACTTCCATTTCCGTCTCCTTCATTTCCCATTTCTCCATTATCAGCTTTTTCTTCTGGTTTAACCTCCACTGAGCTTTTGATCAATTCCTCTCTTCTCTCTAATGGTGTTTTTGGTACGGAAGGTTTTGACTGGAGAAATGAATATAACGATGTGCCAGAAATGAAGGAAGATTTGAAGTTTTTTCAGCCTTTTTCTTCTTCTTCTTCTTCTAACATGATTCCATTGGAAGAATCAGCGGAAGAAAAGAAACAGACATCATGGGATATAAACAAAGGGAATAATAATTTCTCTTGTGAGAAAAGTGAGATTATGAGTAATCAAATCCCAGTTCATTATTCTCAGCAAAAATCAGATTTTGATGGATATAATTGGAGAAAATATGGACAAAAACAAGTCAAAGGAAGTGAAAATCCTCGTAGTTATTACAAGTGTACACATCCAACTTGTCCTACAAAGAAGAAAGTTGAAAGATCTTTACAAGGACAGATTACTGAGATTGTTTACAAAGGAAGTCATAACCATCCTAAGCCTCAGTCCACAAGACGATCTACCACCTCTTCTTCTTCCGTTTTCGATCACTCCGCCGCACCCCTCCCGGCCTATGACTCTGTCTTATTGCCGGACGATTCCTCGGTCTCGGTCGGAGATGATGATCTTGAACCCAATTCTCCCTTTAGTAATCATACTGGAGAAGATAATGAGAATGAACCAGAAGCTAAAAGATGGAAAGGAGAAAATGAAAGTGAGGGATTCTCTGCTCCTGGAAGCAGAACAGTGAAGGAGCCAAGAATTGTAGTTCAAACAACAAGTGAAATTGACATATTAGATGATGGCTATAGATGGAGGAAATATGGACAAAAAGTTGTCAAAGGGAATCCCAATCCAAGGAGCTACTATAAATGCACATCTTTAGGTTGTCCAGTGAGGAAACATGTTGAGAGGGCAGCCAACGACATGAGGGCTGTGATCACCACCTATGAAGGCAAACACAACCACGAAGTTCCAGCGGCACGAGGCGGCAGTGGTGGCGGTTATAATCGACCTTTACCCGCCAATATCCCGTTACCGGTGAGGCCCTCACCGGTAGTCAGTCATTCTTTCCCCATAAATTTCCCTGATTCCATGCAGCCAACAAGGCTGCCCATATCAGGAAATGAAGCACAGGCACCATTTGTTTATCAAACATCACAGAGAGCTCCAGCTAGCTTTCAAGTTATGGGATATGGAAATCACAATGGATTCATTGCCAAGGAAGAACTGAAAGATGATCTATTCCTTGACTCATTTCTTTCTTAG | 1431 | 40.53 | MSFSFETTSLTEFLSNNNNTMNQEMCPINGGSSDNFGMEVPKFKTLPFPSPSFPISPLSAFSSGLTSTELLINSSLLSNGVFGTEGFDWRNEYNDVPEMKEDLKFFQPFSSSSSSNMIPLEESAEEKKQTSWDINKGNNNFSCEKSEIMSNQIPVHYSQQKSDFDGYNWRKYGQKQVKGSENPRSYYKCTHPTCPTKKKVERSLQGQITEIVYKGSHNHPKPQSTRRSTTSSSSVFDHSAAPLPAYDSVLLPDDSSVSVGDDDLEPNSPFSNHTGEDNENEPEAKRWKGENESEGFSAPGSRTVKEPRIVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHVERAANDMRAVITTYEGKHNHEVPAARGGSGGGYNRPLPANIPLPVRPSPVVSHSFPINFPDSMQPTRLPISGNEAQAPFVYQTSQRAPASFQVMGYGNHNGFIAKEELKDDLFLDSFLS | 476 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 920465 | 922613 | + | evm.model.ptg000018l.565 | HCH11g0050 | 553517 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0050 | 476 | MobiDBLite | consensus disorder prediction | 261 | 275 | - | - | |
HCH11g0050 | 476 | MobiDBLite | consensus disorder prediction | 218 | 238 | - | - | |
HCH11g0050 | 476 | MobiDBLite | consensus disorder prediction | 276 | 292 | - | - | |
HCH11g0050 | 476 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 114 | 382 | IPR044810 | GO:0003700(InterPro) | |
HCH11g0050 | 476 | SMART | WRKY_cls | 320 | 379 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0050 | 476 | SMART | WRKY_cls | 163 | 221 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0050 | 476 | ProSiteProfiles | WRKY domain profile. | 315 | 380 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0050 | 476 | FunFam | WRKY transcription factor 33 | 307 | 373 | - | - | |
HCH11g0050 | 476 | Gene3D | WRKY domain | 150 | 223 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0050 | 476 | FunFam | WRKY transcription factor | 151 | 223 | - | - | |
HCH11g0050 | 476 | MobiDBLite | consensus disorder prediction | 212 | 303 | - | - | |
HCH11g0050 | 476 | SUPERFAMILY | WRKY DNA-binding domain | 160 | 222 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0050 | 476 | Gene3D | WRKY domain | 307 | 373 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0050 | 476 | SUPERFAMILY | WRKY DNA-binding domain | 312 | 380 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0050 | 476 | Pfam | WRKY DNA -binding domain | 321 | 378 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0050 | 476 | Pfam | WRKY DNA -binding domain | 165 | 220 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0050 | 476 | ProSiteProfiles | WRKY domain profile. | 158 | 222 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0050 | HCH-Chr11:920465 | HCH3g1486 | HCH-Chr3:52888217 | 9.20E-95 | dispersed | |
HCH11g0050 | HCH-Chr11:920465 | HCH2g0990 | HCH-Chr2:53176155 | 2.40E-87 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32517 | PF03106 | WRKY | 2.40E-25 | CL0274 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0050 | K13424 | - | csv:101205651 | 456.062 |