Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0056 ATGGGAAAAAGCCACTGTTTTTTGAGTGAATTTCAGGCAGACCCATTTGAATTCATGCAGTTTCTTACAAAAAAAACGGCTCCTTTGAGCTCTAAAGAACCAAATTCAAATACAAAATGGAAAAACCAACGATGGTTATTTGGTATTTTTTTCACTCAACTTTTGGTTTTTTCCTTTCAACCAGTTTCTAGCCAATCATGGGATGGAGTTACCCTCACGGAATCAGATTTCAAAGCTCTTCAAGCTTTCAAGCTTCAACTTATTGATAGGAAAGGAATTTTACAAAGCTGGAATGATAGTAATGGAGCTTGTTCTGGAAAATGGGCAGGAATCAAGTGTGTCAATGGACATGTTATTTCCATACAGCTACCGTGGAAGGCACTCGCTGGTCGAATCTCCGACGACATCGGACAACTCCGAGCTCTTCGGAAACTTAGTCTTCACGACAATGCATTCTCCGGCCCCGTCCCCCGGTCAATCGGTTTTCTTTCCGATCTTAGAGGACTTTACCTTTTTAACAACAGATTTTCTGGGACAATTCCTCCTTCTATTGGTAATCTTCCTCTTCTTCAAACTATTGATTTAAGCAACAATTTGTTATCTGGGACAATTCCTCCTACTCTTGCAAATTCTACTAATTTGATTAGAGTGAATTTGAGTTATAATTCTTTATCAGGGTTTATTCCATCTAGTTTTTCTCAGTCTTTTTCTCTTAGAATTCTTGCCCTCCAAAACAATAATCTTTCTGGTCCTATCCCAGATTCTTGGACTGGTTCTAGAAATAAAACTCGTCTTCTTCAGATTCTTACATTGGATCATAATGTTATAACTGGTGGAATTCCTTCTTCTTTGAGCAAATTGGTATGGCTTGAAGAAATTTCCATTAGTCAAAACAGGATTTCTGGAGCTATACCAATTGAAATAAGTAGTTTAAAAAGGCTTCGTGTTTTAGATTTATCAAGCAATGTCCTTGAGAATCAGGTTCCAGGAGCTATTGAGAAGTTGCAGAATCTCTCAGTGTTGAAACTTGGGAAGAATCATTTTAGTGGTGAAATCCCTGCTAGTATTGGGAACATTTCTTCAATTACAAAGCTCGATTTGTCGGAAAATAACTTCACAGGGGAAATTCCGGCATCGCTCACTGGTTTGTTCAATCTTACTTCTCTCAATGTGTCTTACAATAATCTGTCTGGTCCGGTTCCAATTCTTCTATTGAAGAAGTTCAATTCGAGTTCTTTTGTCGGAAATCTCGAGCTTTGTGGTTTTAGTCCTTCAACCCCATGTCCTCCTGCACCATCACCACAGACTCTTCCAGCTCCATCAGTGGAAGTTTCGAAACCCGGCGGACGAAAACTTAGTACGAAGGACATAATTCTGATAGTTGCTGGAGCTCTCTTGGTACTTCTCCTCCTTCTGTGCTCAATCTTGCTCTGTTGTTTGCTGTCAAAAAGAGCAGCTGCAAGGAAAAGGAACGGTAAAACGACGGCCAACCAAGCCGCTGCCACCGCAAGGAGCATCGAGAAGGCGGTGGGGAGTGGCGAAGTCGGGTCGGGGGAATCGGGAGGAAAACTTGTTCATTTTGATGGGCCGTTTGCTTTTACAGCTGATGATCTTCTGTGTGCAACTGCTGAGATAATGGGCAAGAGCACTTATGGAACAGCTTATAAAGCAACATTAGAAGATGGTAATGAAGTTGCAGTGAAGAGGCTGAGGGAAAAGACAACAAAAGGACAAAAGGAATTTGAATCCGAAGTTGCAGGACTTGGCAAAATCAGACACCCAAATCTTCTAGCTCTCAGAGCTTACTATTTGGGTCCTAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGCCAAGAGGAAGTCTCTCTTCTTTCCTCCATGCTCGAGGGCCAGAAACCGCCATTGATTGGCCAACAAGGATGAAGATAGCCATTGGAATTACTAGTGGCTTGAACTATCTCCACACACAGGAAAATCAAATCCATGGAAATCTCACATCCAGCAATGTTCTTCTAGACGATCAAACCAATGCCCACATTGCAGATTTTGGCCTATCAAGGCTCATGATATCCGCCGCCGCCGCCAATGTGATCGCCACGGCCGGAGCACAAGGCTACAATGCACCAGAACTGACAAAAACAAAGAAGGCCACAGCTAAAACAGACGTCTACAGCCTTGGTGTTATAATATTGGAGCTCTTGACCGGAAAATCTCCTGGCGAGGCCATGAACGGAATGGATTTGCCGCAATGGGTGGCGTCGATAGTGAAGGAGGAGTGGACGAATGAAGTCTTCGATCTCGAGCTTATGAAAGATACGCCGAGCATTGGCGATGAGCTTCTCAACACTTTGAAATTATCACTTCATTGTGTGGATCCGTCGCCGGCGGCGAGACCGGATATCCAGCAAGTTCTTCAGCAACTGGAGGAAATTAAGCAGGAGGTGGCTACTACTTCCGGCGACGGCGACGGTGCTAAAGATCAACCAACAAATGAATAG 2499 43.1 MGKSHCFLSEFQADPFEFMQFLTKKTAPLSSKEPNSNTKWKNQRWLFGIFFTQLLVFSFQPVSSQSWDGVTLTESDFKALQAFKLQLIDRKGILQSWNDSNGACSGKWAGIKCVNGHVISIQLPWKALAGRISDDIGQLRALRKLSLHDNAFSGPVPRSIGFLSDLRGLYLFNNRFSGTIPPSIGNLPLLQTIDLSNNLLSGTIPPTLANSTNLIRVNLSYNSLSGFIPSSFSQSFSLRILALQNNNLSGPIPDSWTGSRNKTRLLQILTLDHNVITGGIPSSLSKLVWLEEISISQNRISGAIPIEISSLKRLRVLDLSSNVLENQVPGAIEKLQNLSVLKLGKNHFSGEIPASIGNISSITKLDLSENNFTGEIPASLTGLFNLTSLNVSYNNLSGPVPILLLKKFNSSSFVGNLELCGFSPSTPCPPAPSPQTLPAPSVEVSKPGGRKLSTKDIILIVAGALLVLLLLLCSILLCCLLSKRAAARKRNGKTTANQAAATARSIEKAVGSGEVGSGESGGKLVHFDGPFAFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFESEVAGLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETAIDWPTRMKIAIGITSGLNYLHTQENQIHGNLTSSNVLLDDQTNAHIADFGLSRLMISAAAANVIATAGAQGYNAPELTKTKKATAKTDVYSLGVIILELLTGKSPGEAMNGMDLPQWVASIVKEEWTNEVFDLELMKDTPSIGDELLNTLKLSLHCVDPSPAARPDIQQVLQQLEEIKQEVATTSGDGDGAKDQPTNE 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 956353 959044 + evm.model.ptg000018l.559 HCH11g0056 553523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0056 832 FunFam Leucine-rich repeat receptor-like protein kinase 525 616 - -
HCH11g0056 832 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 257 431 - -
HCH11g0056 832 Gene3D Phosphorylase Kinase; domain 1 546 617 - -
HCH11g0056 832 PRINTS Leucine-rich repeat signature 311 324 - -
HCH11g0056 832 PRINTS Leucine-rich repeat signature 190 203 - -
HCH11g0056 832 Pfam Leucine Rich Repeat 166 187 IPR001611 GO:0005515(InterPro)
HCH11g0056 832 Pfam Leucine Rich Repeat 385 403 IPR001611 GO:0005515(InterPro)
HCH11g0056 832 Pfam Leucine Rich Repeat 361 383 IPR001611 GO:0005515(InterPro)
HCH11g0056 832 Pfam Protein tyrosine and serine/threonine kinase 544 808 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0056 832 FunFam Pollen receptor-like kinase 1 617 821 - -
HCH11g0056 832 Gene3D Ribonuclease Inhibitor 304 430 IPR032675 -
HCH11g0056 832 Gene3D Transferase(Phosphotransferase) domain 1 618 826 - -
HCH11g0056 832 Gene3D Ribonuclease Inhibitor 198 303 IPR032675 -
HCH11g0056 832 Gene3D Ribonuclease Inhibitor 75 190 IPR032675 -
HCH11g0056 832 ProSiteProfiles Protein kinase domain profile. 540 811 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0056 832 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 55 821 IPR052451 -
HCH11g0056 832 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 73 226 - -
HCH11g0056 832 MobiDBLite consensus disorder prediction 813 832 - -
HCH11g0056 832 SUPERFAMILY Protein kinase-like (PK-like) 544 813 IPR011009 -
HCH11g0056 832 SUPERFAMILY L domain-like 97 424 - -
HCH11g0056 832 Coils Coil 801 821 - -
HCH11g0056 832 Pfam Leucine rich repeat N-terminal domain 75 113 IPR013210 -
HCH11g0056 832 CDD STKc_IRAK 546 811 - -
HCH11g0056 832 Pfam Leucine rich repeat 189 248 IPR001611 GO:0005515(InterPro)
HCH11g0056 832 Pfam Leucine rich repeat 265 324 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0056 HCH-Chr11:956353 HCH1g0752 HCH-Chr1:56335050 1.40E-69 dispersed
HCH11g0056 HCH-Chr11:956353 HCH11g0057 HCH-Chr11:960348 8.80E-210 tandem
HCH14g0536 HCH-Chr14:34295142 HCH11g0056 HCH-Chr11:956353 1.00E-45 transposed
HCH3g0863 HCH-Chr3:6821327 HCH11g0056 HCH-Chr11:956353 9.40E-55 transposed
HCH5g0978 HCH-Chr5:9097866 HCH11g0056 HCH-Chr11:956353 1.20E-63 transposed
HCH8g0505 HCH-Chr8:41780369 HCH11g0056 HCH-Chr11:956353 3.80E-53 transposed
HCH1g0348 HCH-Chr1:50181575 HCH11g0056 HCH-Chr11:956353 5.40E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81023 PF07714 PK_Tyr_Ser-Thr 2.20E-40 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0056 - - - 0.0