Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0057 ATGACGGGAAAAAACCAGGCACACCCATTTCAGTTTATGCAGCTTCATGCAGAAAAGAATGGAAAATGGAAATGGAGAAGTTCTTCTTTGTTTCCATTTGCTCTATTTATTATCACTCAGTTTTTGGCTTTTTTTCTTCAGCCAGCTTTGGCTCAGACGTGGGATGGAGTAGCTTTGAGGCAAGGAGATTATCAAACTTTGCTTGCTTTTAAAAATGAATTTATTGATATGAAAGGAGTTTTGCAAAGCTGGAATAATAGTAATGAAGCTTGTTCTGGTGGTTGGATTGGAATCAAGTGTGTGAGGGGACAGGTTATTGCCATACAGCTTCCTTCCAAGGCTCTTGCAGGAGAGATTTCTGAAGTGATTGGGCAGCTAAGAGCTCTTAGGAAACTTAGCCTCCATGACAATGTTATCTCCGGCGCCGTCCCTCGGTCTCTTGGTATTTTGCCGGATCTTAGAGGAGTTTACCTTTTCAATAACCGGCTTTCGGGGTCGATTCCGGCATCCATTGGTAACCTTCCTCTTCTTCAAACTATTGATTTGAGTAACAATATGCTCACTGGAACAATTCCTCCTGGTCTTGCTAATTCTACTAATTTGATTAGAGTGAATTTGAGCTTTAATTCTTTGGAGGGGTCTATTCCTAATAGTTTTATGCAGTCCTTTTCTCTTAGAATTCTGGCTCTTCAAAACAACAATATTTCTGGTTCTATCCCTGATGCTTGGAATGGTTCTAGAAATAGAACTTGTCTTCTTCAAATTCTAACATTGGATCATAATGCTATAAGTGGTGGAATTCCTTCTTCTTTGAGTAAATTGGTTTGGATTGAAGAAATTTCCTTTAGTCAAAACAGGATTTCTGGAGCTATACCAAGTGAAATAAGTAATCTGAAAAGGCTTCGTGTTTTAGATTTATCAAACAATCGTTTCAGTGGTGGAATCCCGGAGAGTATCGGGAACATTTCTTCCGTTACCGAGCTCGATTTGTCGGAAAACAACTTCACGGGAGAAATTCCATCTTCACTCACTCGTTTGTCCAATCTAACTTCTTTCAATGTCTCTTACAATAGTCTGTCTGGACCTGTCCCCATTCTCCTATTGAAGAAGTTCAATTCGAGTTCTTTTGTCGGAAACCTCGAACTTTGTGGTTTTAGTCCTTCAACCCCATGTCCTCCTGCACCCTCCACACAGAATTTTCCAGCTCCTTCGGTCGAGGTTTCGAAACCGCATCGCCGCAAACTTAGTACAAAGGACACAATTCTGATAGCTGCTGGAGCTCTCTTAGCGCTTCTTCTTATACTCTGCTCAATCTTGCTATGTTGTTTGTTGTCAAGAAGAGCTGCTGCAAAAAAACAAGATGGTAAAACTACTGAGCAAGCGGCTGCAAGAAGCGCCGAGAAGGCAGTGCCAGGCAGCAGTGAAGTCGGGGCGGGCGAAGCAGGTGGAAAACTTGTGCATTTTGATGGGCCATTTGTTTTTACAGCTGATGATCTTCTGTGTGCAACTGCTGAGATAATGGGCAAGAGCGCTTATGGAACAGCTTATAAAGCAACATTAGAAGATGGTAATGAAGTTGCAGTGAAGAGGCTGAGGGAAAAGACAACAAAAGGACAAAAGGAATTTGAATCTGAAGTTGCAGGACTTGGCAAAATCAGACACCCAAATCTTCTATCTCTCAGAGCTTACTATTTGGGTCCTAAAGGAGAGAAGCTTCTCGTCTTTGATTACATGCCTAGAGGAAGTCTCTCTTCCTTCCTTCATGCTCGCGGGCCAGAAACCGCCATAGATTGGCCGACAAGGATGAAGATAGCCGTCGGAATCACTCGAGGCTTATGCTACCTCCACACACAAGAAAATCTAATTCATGGAAATCTCACATCAGGCAACATTCTGCTAGATGATCAAACCAATGCCCGCATCGCTGATTTCGGCCTTTCGAAACTCATGACATCTGCAGCCATCACAAATGTGATTGCCACAGCAGGAGCACAAGGCTACAATGCACCAGAGCTAACAAAAACAAAGAAAACCACAACAAAGACAGATATCTATAGCCTTGGAGTTATAATCCTAGAACTCTTAACTGGGAAATCTCCTGGTGAAGCAATGAATGGAACAGATTTGCCTCAATGGGTTGCTTCAATAGTGAAGGAAGAATGGACTAATGAAGTATTTGATTTGGAGCTGATGAGAGATGCACCAAATATAGGTGATGAGTTGCTTAATACTTTGAAACTAGCCCTGCATTGTGTCGATCCGTCACCGGCGGCTCGGCCGGAGATCGGGCTAATTCTACAGCAGTTGGAGGAAATTAAGCCGGATTTGGCTTCTACTTCTGGTGATGATAGTGCTATAGATCAACCAAGAAGCGAATAA 2379 42.54 MTGKNQAHPFQFMQLHAEKNGKWKWRSSSLFPFALFIITQFLAFFLQPALAQTWDGVALRQGDYQTLLAFKNEFIDMKGVLQSWNNSNEACSGGWIGIKCVRGQVIAIQLPSKALAGEISEVIGQLRALRKLSLHDNVISGAVPRSLGILPDLRGVYLFNNRLSGSIPASIGNLPLLQTIDLSNNMLTGTIPPGLANSTNLIRVNLSFNSLEGSIPNSFMQSFSLRILALQNNNISGSIPDAWNGSRNRTCLLQILTLDHNAISGGIPSSLSKLVWIEEISFSQNRISGAIPSEISNLKRLRVLDLSNNRFSGGIPESIGNISSVTELDLSENNFTGEIPSSLTRLSNLTSFNVSYNSLSGPVPILLLKKFNSSSFVGNLELCGFSPSTPCPPAPSTQNFPAPSVEVSKPHRRKLSTKDTILIAAGALLALLLILCSILLCCLLSRRAAAKKQDGKTTEQAAARSAEKAVPGSSEVGAGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNEVAVKRLREKTTKGQKEFESEVAGLGKIRHPNLLSLRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETAIDWPTRMKIAVGITRGLCYLHTQENLIHGNLTSGNILLDDQTNARIADFGLSKLMTSAAITNVIATAGAQGYNAPELTKTKKTTTKTDIYSLGVIILELLTGKSPGEAMNGTDLPQWVASIVKEEWTNEVFDLELMRDAPNIGDELLNTLKLALHCVDPSPAARPEIGLILQQLEEIKPDLASTSGDDSAIDQPRSE 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 960348 962845 + evm.model.ptg000018l.558 HCH11g0057 553524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0057 792 Pfam Protein tyrosine and serine/threonine kinase 504 769 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0057 792 SUPERFAMILY L domain-like 110 368 - -
HCH11g0057 792 FunFam Pollen receptor-like kinase 1 578 783 - -
HCH11g0057 792 SUPERFAMILY Protein kinase-like (PK-like) 505 775 IPR011009 -
HCH11g0057 792 Gene3D Ribonuclease Inhibitor 115 394 IPR032675 -
HCH11g0057 792 Gene3D Ribonuclease Inhibitor 56 114 IPR032675 -
HCH11g0057 792 Gene3D Transferase(Phosphotransferase) domain 1 579 786 - -
HCH11g0057 792 PRINTS Leucine-rich repeat signature 298 311 - -
HCH11g0057 792 PRINTS Leucine-rich repeat signature 177 190 - -
HCH11g0057 792 Pfam Leucine rich repeat N-terminal domain 62 100 IPR013210 -
HCH11g0057 792 CDD STKc_IRAK 507 772 - -
HCH11g0057 792 ProSiteProfiles Protein kinase domain profile. 501 776 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0057 792 FunFam Leucine-rich repeat receptor-like protein kinase 487 577 - -
HCH11g0057 792 Gene3D Phosphorylase Kinase; domain 1 507 578 - -
HCH11g0057 792 FunFam Leucine-rich repeat receptor-like protein kinase 60 217 - -
HCH11g0057 792 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 47 782 IPR052451 -
HCH11g0057 792 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 268 391 - -
HCH11g0057 792 Pfam Leucine Rich Repeat 224 243 IPR001611 GO:0005515(InterPro)
HCH11g0057 792 Pfam Leucine Rich Repeat 153 174 IPR001611 GO:0005515(InterPro)
HCH11g0057 792 Pfam Leucine Rich Repeat 200 220 IPR001611 GO:0005515(InterPro)
HCH11g0057 792 Pfam Leucine Rich Repeat 177 197 IPR001611 GO:0005515(InterPro)
HCH11g0057 792 Pfam Leucine Rich Repeat 325 346 IPR001611 GO:0005515(InterPro)
HCH11g0057 792 Pfam Leucine rich repeat 253 311 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0057 HCH-Chr11:960348 HCH1g0752 HCH-Chr1:56335050 6.30E-72 dispersed
HCH8g0505 HCH-Chr8:41780369 HCH11g0057 HCH-Chr11:960348 4.60E-51 dispersed
HCH11g0056 HCH-Chr11:956353 HCH11g0057 HCH-Chr11:960348 8.80E-210 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81024 PF07714 PK_Tyr_Ser-Thr 4.00E-40 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0057 - - - 0.0