Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0062 ATGGCTATGGCAGCTTCTTTTGCTTGCTTTCTTCTAATCTTTCTCCTGCCTATTGCTGCTCTTTCTTTGCACCAACCTCTTGTTTACAATGGCTTCAATGATTCAGATGATCTGATCCTTGGTCTTGGAGCTTCTATTATTAGGCCACAAGGCTTGTTAATGCTAACCAATAGCGCACAGAATGTTATAGGCCGGGCATTCTATAATACTTCCGTCCAGATGTTCGACGAACCAACCGGACCGATACCGAATATTTCTTCCTTCAGTGCAACCTTTGTGTTTGCTATTGTCAAGTCGAACTCCGGCCCCAGTGGTTACGGCCTCGCCTTTGTTTTAGCTCCATCGCCCGAAATTGAGGGTGCTGATAGCGGACACTATTTAGGATTATTCAACTCCAACGATAAAAACTCTTCAAACCATATCTTTGCAGTTGAATTCGATACTAGAAAAGGAGTTAACGAGAGCGCTAATTCGCTTGGGAACCATGTCGGAATCAACAAGAATGGCGTGCAGTCGAATGCATCCGAAATAGCTGAGTATTCTAATTATGGCTCTGATAATGAAAATGAAGTGTATTTGGATAGTGGTGATCCAATTCAAGCTTGGATTGAATATGATGGCCGCTCTAAAGTTGTGAATGTTACAATAGCTCCCGCAAACATTGAGAAACCGACCAAGCCGTTAATTACGTATGACATCGATCTGACTTCAGTTATAAAAGAAAGAATGTTTGTTGGCTTCTCTGCATCAACTGGTATTGAGACAAGCTTCCATTACATTTTAGGATGGAGTTTTGCAATCAATGGAACAGCACCCGCCTTAAACATTTCTCAGCTTCCTATACCACCTAGAGTGGAAATTTTTTCGCCATCGCTGTCGTTGACGTTGAGTCCTCAGCTTACTGCTCTTATAGCAGCATTATCTGCAGTGACCCTTATAGGAATTTTGTTCTTAGCCATCATTTTCAAAAGACGATTAAAAGGCGAGATCCTTGAAGAATGGGAAAGAGATTGTCCTCATCGATTTAGTTACACAGATCTTCATAAAGCCACAAAGGGATTTAAAGACAGTGAGTTAATTGGATCAGGAGGCTTTGGTTCAGTCTATAAAGGTATCTTGCTCTCTACTAGATGTGAAGTTGCTGTGAAGAAGGTGACTAGAAATTCAAGTCAGGGAATGAGAGAATTCGCCGCCGAGATCGAAAGTTTGGGCCGACTAAGACACAAGAATTTAGTCAATCTCCAAGGTTGGTGCAAGAGAAAGAATGATCTCCTCTTGGTTTATGACTTCATTCCAAATGGAAGCCTTTATTCTCTTCTCTACCATCCACAAAACAACTTTGTATTGAATTGGAAACAAAGGTTCAGCATCCTGAAAGGCATTGCTGCAGGGCTTGTGTATCTACACGAAGAATGGGAGCGAGTAGTGATCCATCGAGACGTTAAGCCGAGCAATGTCTTGATAGATACCGATATGAGTGCTCGGCTAAGTGACTTTGGTCTAGCTCGGCTATATGATCATGATCAAATATCGCATACAACTAGTGTCGTCGGCACAATAGGCTACATCTCACCGGAGTTAGCTCGAATGGGGAAAGCGTCTAAAATGACTGATGTGTTTGCATATGGAGTTTTACTTCTTGAAGTGGCATGTGGAAGAAGACCTCTAGGATCAGATCAGTTCATCTTGGTGGATTGGGTGATGGAATGCTACGAAAGGGGTCGGATTCTCGACACGGCCGATCCGAAGTTGAATGCGGTTTATGAAGTCGATGAGATGGAGATGGTGTTGCAGCTTGGACTTCTATGTGCTCATCAGAAACCAGAAGCTAGGCCAAGCATGAGGCAAATCACAAAGTATCTCAATGGGGAAGGCCAAATTCTTCCTATAGATCCTTCAACTTACTATCAAATTATCTCTAGATCTAACTCAGGATTCACAGAATTTATTCCAACAACTTTGTATAGTACTTCATCTACTGGTTTGATCTCTTCAAATTCATTAGATGAAGGTAGATAA 2019 42.0 MAMAASFACFLLIFLLPIAALSLHQPLVYNGFNDSDDLILGLGASIIRPQGLLMLTNSAQNVIGRAFYNTSVQMFDEPTGPIPNISSFSATFVFAIVKSNSGPSGYGLAFVLAPSPEIEGADSGHYLGLFNSNDKNSSNHIFAVEFDTRKGVNESANSLGNHVGINKNGVQSNASEIAEYSNYGSDNENEVYLDSGDPIQAWIEYDGRSKVVNVTIAPANIEKPTKPLITYDIDLTSVIKERMFVGFSASTGIETSFHYILGWSFAINGTAPALNISQLPIPPRVEIFSPSLSLTLSPQLTALIAALSAVTLIGILFLAIIFKRRLKGEILEEWERDCPHRFSYTDLHKATKGFKDSELIGSGGFGSVYKGILLSTRCEVAVKKVTRNSSQGMREFAAEIESLGRLRHKNLVNLQGWCKRKNDLLLVYDFIPNGSLYSLLYHPQNNFVLNWKQRFSILKGIAAGLVYLHEEWERVVIHRDVKPSNVLIDTDMSARLSDFGLARLYDHDQISHTTSVVGTIGYISPELARMGKASKMTDVFAYGVLLLEVACGRRPLGSDQFILVDWVMECYERGRILDTADPKLNAVYEVDEMEMVLQLGLLCAHQKPEARPSMRQITKYLNGEGQILPIDPSTYYQIISRSNSGFTEFIPTTLYSTSSTGLISSNSLDEGR 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 992771 994789 + evm.model.ptg000018l.553 HCH11g0062 553529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0062 672 FunFam L-type lectin-domain containing receptor kinase V.9 24 270 - -
HCH11g0062 672 SMART serkin_6 354 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0062 672 FunFam L-type lectin-domain containing receptor kinase S.4 431 633 - -
HCH11g0062 672 ProSitePatterns Protein kinases ATP-binding region signature. 360 384 IPR017441 GO:0005524(InterPro)
HCH11g0062 672 PANTHER - 44 629 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
HCH11g0062 672 CDD lectin_legume_LecRK_Arcelin_ConA 28 269 IPR001220 GO:0030246(InterPro)
HCH11g0062 672 SUPERFAMILY Protein kinase-like (PK-like) 338 657 IPR011009 -
HCH11g0062 672 Gene3D Transferase(Phosphotransferase) domain 1 431 627 - -
HCH11g0062 672 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 285 IPR013320 -
HCH11g0062 672 Gene3D Phosphorylase Kinase; domain 1 339 430 - -
HCH11g0062 672 Pfam Legume lectin domain 28 279 IPR001220 GO:0030246(InterPro)
HCH11g0062 672 ProSiteProfiles Protein kinase domain profile. 354 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0062 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0062 672 FunFam serine/threonine-protein kinase PBS1-like 323 430 - -
HCH11g0062 672 Pfam Protein kinase domain 355 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0062 672 Gene3D - 27 276 - -
HCH11g0062 672 CDD STKc_IRAK 360 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0062 HCH-Chr11:992771 HCH9g0690 HCH-Chr9:4598386 1.20E-156 dispersed
HCH11g0061 HCH-Chr11:988302 HCH11g0062 HCH-Chr11:992771 1.80E-155 tandem
HCH11g0062 HCH-Chr11:992771 HCH11g0063 HCH-Chr11:997206 7.30E-247 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81025 PF00069 Pkinase 5.20E-51 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0062 - - - 0.0