Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0064 ATGAACAACCTCGTACCACCGCCTCCGCCGTACACGGCGACCGGATCACCACCATGGCTAAACAGCGGCGACAACGCATGGCAAATGACAGCCTCCACCCTCGTCGGACTTCAAAGCATGCCAGGCCTCGTAATTCTCTATGCCAGCATCGTGAAAAAGAAATGGGCTGTAAATTCAGCTTTCATGGCTCTTTACGCTTTCGCCGCCGTTCTCATTTGTTGGGTCCTCGTCGGTTACCGTATGGCGTTCGGCGACGAACTGATTCCGATATGGGGTAAAGGAATTCCTTCTCTTTCACAAAATTACCTCATTAATCGCGCTAATATACCGGAAAGTGCTCATTTTCGCCGCGACGGGAGTATTGAATCTCAGAGAATCGAACCCAATTATCCCATGGCTTCCCTCGTTTACTTTCAATTCACTTTTGCTGCGATCACTGTGATTTTGTTAGCTGGGTCTGTTCTTGCCCGGATGAATATCAAGGCTTGGATGGCTTTTGTTCCTCTTTGGGTTATTTTTTCTTACACCGTTGGAGCTTATACTCTTTGGGGTGGAGGCTTTCTCTTTCATTGGGGTGTTATTGATTACTCCGGCGGCTATGTCATCCATCTCTCCTCCGGAATTTCCGGTTTGACGGCCGCTTACTGGGTTGGTCCCCGGATAAAGAGCGACAGGGAGAGGTTTCCGCCGAACAACGTGCTGTTGATGCTTGCCGGAGCGGGGTTGTTGTGGATGGGTTGGTCGGGATTCAACGGCGGAGCGCCGCACGCGGCGAACGTGGTGGCGTCGATAGCCATATTGAACACGAATGTGAGCGCGGCGACGAGTCTATTGGTGTGGACCACTTTGGATGTCATTTTCTTTGGGAAGCCATCGGTGATTGGAGCCGTTCAGGGAATGATGACTGGATTAGCTTGCGTTACACCTGGCGCAGGAGTGGTCCAAACGTGGGCGGCTATCATAATGGGGATATTATCAGGTAGCATTCCGTGGGTCTCCATGATGGTTCTTCACAAAAAATTGAGTTTCTTGCAAAAGGCCGATGACACGCTCGGCGTTTTCCACACCCACGCCGTGGCGGGGATGCTGGGCGGGCTTCTCACTGGGCTTTTTGCCGATCCCGCTCTCTGCCGCCTTTACCTTCCGGTCACCGACACACGCGGTGCCTTCTACGGTGGCTCCGGTGGCATGCAGTTTGTTAAACAAATTGTTGGAGCCATGTTTATTATCGGATGGAATGTAGTATCTACTACAATTATACTCCTCTTCATAAGGTTGTTTATGCCTCTAAGAATGCCGGACGAGGAATTGATGATCGGAGACGACGCCGTGCACGGCGAGGAGGCTTACGCTCTTTGGGGAGACGGCGAGAAATTCGACCCGAGAAGACACGGTAATGCCGTGGCGGGGAACATGGAGGAGAGAACGGCATCACCTTATATCAATGGTGCTAGAGGAGTTACAATCAACTTGTAA 1476 51.49 MNNLVPPPPPYTATGSPPWLNSGDNAWQMTASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVGYRMAFGDELIPIWGKGIPSLSQNYLINRANIPESAHFRRDGSIESQRIEPNYPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFSYTVGAYTLWGGGFLFHWGVIDYSGGYVIHLSSGISGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHAANVVASIAILNTNVSAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLACVTPGAGVVQTWAAIIMGILSGSIPWVSMMVLHKKLSFLQKADDTLGVFHTHAVAGMLGGLLTGLFADPALCRLYLPVTDTRGAFYGGSGGMQFVKQIVGAMFIIGWNVVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAVAGNMEERTASPYINGARGVTINL 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1003732 1006506 + evm.model.ptg000018l.551 HCH11g0064 553531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0064 491 FunFam Ammonium transporter 10 453 - -
HCH11g0064 491 PRINTS Rhesus blood group protein signature 234 252 IPR002229 GO:0005886(InterPro)
HCH11g0064 491 PRINTS Rhesus blood group protein signature 139 155 IPR002229 GO:0005886(InterPro)
HCH11g0064 491 PRINTS Rhesus blood group protein signature 320 338 IPR002229 GO:0005886(InterPro)
HCH11g0064 491 PRINTS Rhesus blood group protein signature 265 287 IPR002229 GO:0005886(InterPro)
HCH11g0064 491 ProSitePatterns Ammonium transporters signature. 195 220 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH11g0064 491 SUPERFAMILY Ammonium transporter 19 432 - -
HCH11g0064 491 Gene3D Ammonium transporter AmtB like domains 11 453 IPR029020 -
HCH11g0064 491 Pfam Ammonium Transporter Family 26 450 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH11g0064 491 PANTHER AMMONIUM TRANSPORTER MEP2 19 461 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
HCH11g0064 491 NCBIfam ammonium transporter 24 450 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0064 HCH-Chr11:1003732 HCH2g0316 HCH-Chr2:43114283 4.40E-201 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0064 K03320 - csv:101207321 848.58