Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0064 | ATGAACAACCTCGTACCACCGCCTCCGCCGTACACGGCGACCGGATCACCACCATGGCTAAACAGCGGCGACAACGCATGGCAAATGACAGCCTCCACCCTCGTCGGACTTCAAAGCATGCCAGGCCTCGTAATTCTCTATGCCAGCATCGTGAAAAAGAAATGGGCTGTAAATTCAGCTTTCATGGCTCTTTACGCTTTCGCCGCCGTTCTCATTTGTTGGGTCCTCGTCGGTTACCGTATGGCGTTCGGCGACGAACTGATTCCGATATGGGGTAAAGGAATTCCTTCTCTTTCACAAAATTACCTCATTAATCGCGCTAATATACCGGAAAGTGCTCATTTTCGCCGCGACGGGAGTATTGAATCTCAGAGAATCGAACCCAATTATCCCATGGCTTCCCTCGTTTACTTTCAATTCACTTTTGCTGCGATCACTGTGATTTTGTTAGCTGGGTCTGTTCTTGCCCGGATGAATATCAAGGCTTGGATGGCTTTTGTTCCTCTTTGGGTTATTTTTTCTTACACCGTTGGAGCTTATACTCTTTGGGGTGGAGGCTTTCTCTTTCATTGGGGTGTTATTGATTACTCCGGCGGCTATGTCATCCATCTCTCCTCCGGAATTTCCGGTTTGACGGCCGCTTACTGGGTTGGTCCCCGGATAAAGAGCGACAGGGAGAGGTTTCCGCCGAACAACGTGCTGTTGATGCTTGCCGGAGCGGGGTTGTTGTGGATGGGTTGGTCGGGATTCAACGGCGGAGCGCCGCACGCGGCGAACGTGGTGGCGTCGATAGCCATATTGAACACGAATGTGAGCGCGGCGACGAGTCTATTGGTGTGGACCACTTTGGATGTCATTTTCTTTGGGAAGCCATCGGTGATTGGAGCCGTTCAGGGAATGATGACTGGATTAGCTTGCGTTACACCTGGCGCAGGAGTGGTCCAAACGTGGGCGGCTATCATAATGGGGATATTATCAGGTAGCATTCCGTGGGTCTCCATGATGGTTCTTCACAAAAAATTGAGTTTCTTGCAAAAGGCCGATGACACGCTCGGCGTTTTCCACACCCACGCCGTGGCGGGGATGCTGGGCGGGCTTCTCACTGGGCTTTTTGCCGATCCCGCTCTCTGCCGCCTTTACCTTCCGGTCACCGACACACGCGGTGCCTTCTACGGTGGCTCCGGTGGCATGCAGTTTGTTAAACAAATTGTTGGAGCCATGTTTATTATCGGATGGAATGTAGTATCTACTACAATTATACTCCTCTTCATAAGGTTGTTTATGCCTCTAAGAATGCCGGACGAGGAATTGATGATCGGAGACGACGCCGTGCACGGCGAGGAGGCTTACGCTCTTTGGGGAGACGGCGAGAAATTCGACCCGAGAAGACACGGTAATGCCGTGGCGGGGAACATGGAGGAGAGAACGGCATCACCTTATATCAATGGTGCTAGAGGAGTTACAATCAACTTGTAA | 1476 | 51.49 | MNNLVPPPPPYTATGSPPWLNSGDNAWQMTASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVGYRMAFGDELIPIWGKGIPSLSQNYLINRANIPESAHFRRDGSIESQRIEPNYPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFSYTVGAYTLWGGGFLFHWGVIDYSGGYVIHLSSGISGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHAANVVASIAILNTNVSAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLACVTPGAGVVQTWAAIIMGILSGSIPWVSMMVLHKKLSFLQKADDTLGVFHTHAVAGMLGGLLTGLFADPALCRLYLPVTDTRGAFYGGSGGMQFVKQIVGAMFIIGWNVVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAVAGNMEERTASPYINGARGVTINL | 491 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1003732 | 1006506 | + | evm.model.ptg000018l.551 | HCH11g0064 | 553531 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0064 | 491 | FunFam | Ammonium transporter | 10 | 453 | - | - | |
HCH11g0064 | 491 | PRINTS | Rhesus blood group protein signature | 234 | 252 | IPR002229 | GO:0005886(InterPro) | |
HCH11g0064 | 491 | PRINTS | Rhesus blood group protein signature | 139 | 155 | IPR002229 | GO:0005886(InterPro) | |
HCH11g0064 | 491 | PRINTS | Rhesus blood group protein signature | 320 | 338 | IPR002229 | GO:0005886(InterPro) | |
HCH11g0064 | 491 | PRINTS | Rhesus blood group protein signature | 265 | 287 | IPR002229 | GO:0005886(InterPro) | |
HCH11g0064 | 491 | ProSitePatterns | Ammonium transporters signature. | 195 | 220 | IPR018047 | GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro) | |
HCH11g0064 | 491 | SUPERFAMILY | Ammonium transporter | 19 | 432 | - | - | |
HCH11g0064 | 491 | Gene3D | Ammonium transporter AmtB like domains | 11 | 453 | IPR029020 | - | |
HCH11g0064 | 491 | Pfam | Ammonium Transporter Family | 26 | 450 | IPR024041 | GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro) | |
HCH11g0064 | 491 | PANTHER | AMMONIUM TRANSPORTER MEP2 | 19 | 461 | IPR001905 | GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro) | |
HCH11g0064 | 491 | NCBIfam | ammonium transporter | 24 | 450 | IPR001905 | GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0064 | HCH-Chr11:1003732 | HCH2g0316 | HCH-Chr2:43114283 | 4.40E-201 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0064 | K03320 | - | csv:101207321 | 848.58 |