Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0068 ATGGACATGGATATCGATAACAACAATTCAACAGCTGAAGGAAGAGAAGGGGAAGGGGAAGGGAAGCTGATGGTGGTGATATTAGTGGGTGCACCAGGAAGCGGCAAATCCACTTTCTGTGAACTCGTAATGGGTTCCTCAAGTCGCCCGTGGGTTCGCATTTGCCAGGATACCATTGGAAATGGGAAGGCCGGAACCAAAGTGCAGTGCTTGAAGAGCGCAGCTAGTGCATTGAGTGATAGAAAGAGTATATTCATCGATAGATGCAATCTTGACATAGAGCAGCGTGCAGAATTTGTGAAACTTGGGGGTCCTCAAGTGGATGTGCATGCTGTTGTTTTAGATCTTCCCGCAAAGCTCTGTATTTCTCGTTCTGTTAAGCGGACTGGTCATGAAGGGAATTTACAAGGTGGAAAAGCTGCTGCTGTTGTGAATAGGATGTTGCAAAAGAAAGAATTGCCCAAGCTAAATGAAGGGTTTACTCGTATAACCTTTTGCCACAGCGAGACTGACGTTCAATCTGCTATTGAAACATACAAATCACTTGGTTCGCTTGATACTCTTCCACATGGATGTTTTGGTCAGAAGAACCCAGATACCAAAGTGCAACTTGGCATTATGAAGTTCTTAAAGAAGGTAGATAATCCTGCTAAGACAGGTTCCAGCACCAATACCAATAAGGATTCTCTAATTTTTCAGACTACCCAGGAAAAGAGCCAGTTATGTGGAAAGGAACAGACTGCCTGCACAATATCCTGCAGTGTTGATAAAGAGCCAGATAAAGGTGAGCATCCAGGTGTAAGATCCTTAGGAGATGATCTTTCTCAAAATGATCCTCCAACTCTTGCATTTCCATCTATTTCGACAGCAGATTTTAAATTCAACCATGAAAAGGCTGCTGAAATTATAGTGGAGACGGTCGAGGAATTCATGGATAAGCTTGGAAATGGCAGACTAGTTTTAGTTGACTTGAGTCATGGGTCGAAGATTTTGTCTTTGGTTGAAGCTAAAGCAGCAAAGAAAAATATCAATTCCAACAAGTTTTTTACGTTTGTTGGAGATATAACTAGACTCAATTCCAAAGGTGGATTGCGCTGCAATGTTATAGCCAATGCTGCTAATTGGCGACTGAAACCTGGAGGTGGTGGTGTCAATGCAGCAATTTTTAGTGCTGCAGGTCCTGGATTGGAAGTGGCAACTAAACAAGAAGCTAACTCCCTTCACCCTGGTAATGCTTTGATTGTTCCATTGCCTTCAATTTCTCCTTTGTTCATTAGGGAAGGGGTAACCCATGTCATACATGTTCTTGGACCCAATATGAATCCACAACGGCCAAATTATCTCGACAGTGACTATGATGAAGGTTGCAAAGTTCTTCGTGCTGCTTACTCTTCCTTATTTCAAGGTTTTGTTTCAATAGTGGAAGATCAGTTTAAGTCTGTGAGGGGAATCCACGAACGCCTTGGCCCAGCACCTTCAGAATCACGAAAGCACTCTGGGGACAGCCCCAGAAGTACCTTCCTTAGTAGTGATCACAAGTTTAAGAGAGAGGATGTGCAAAATTCTGAAAGAAGCAAAAAGTGGAAAGGATCTCAGGATACAGCTGAAGTATTAAATCAAAACAACAATAAGACTGTCCAGAAAGTAAGCAAGCAATGGGGATCATGGGCTCACGCTCTTTACAACACCGCAATGCATCCTGAGAAACATGGTGATACTGTACTGGAGGTATCAGATGATGTTGTAATATTGAATGATATTTATGCGAAGGCACACAAGCATCTCCTGGTAGTGGCTCGGTGTGAAGGTCTGGATCAATTGGACGATTTACGTAGAGAACACCTTCCATTGTTGAGGACTATGCATGCTTTGGGTTTGAAGTGGATTGATAAATTCTTTCATGAAGATGTATCATTGGTTTTTCGCCTCGGATACCACTCGGCTCCATCCATGAGGCAGCTACACCTACATGTTATAAGCCAAGATTTCAACTCGAGTCATCTGAAGAACAAGAAGCACTGGAATTCGTTCAACACCGATTTCTTTAGAGACTCCGTAGATGTTATCGACGAAGTAAGTAACCACGGAAAAGCAAGCATTAAGGATGACGAGAGCTTGATTTCGATGGAGTTGCGTTGCAACAGATGCAGAAGTGCACATCCCAACATTCCAAAATTGAAATTACATATTGCTAAATGTGAAGCCCCATTCCCTTCCACACTGCTCCAAGGTGGTCGTTTAGTGCTTGGACCAAGAAATACTGCCTCTCTCCCATAA 2277 42.95 MDMDIDNNNSTAEGREGEGEGKLMVVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKAGTKVQCLKSAASALSDRKSIFIDRCNLDIEQRAEFVKLGGPQVDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLNEGFTRITFCHSETDVQSAIETYKSLGSLDTLPHGCFGQKNPDTKVQLGIMKFLKKVDNPAKTGSSTNTNKDSLIFQTTQEKSQLCGKEQTACTISCSVDKEPDKGEHPGVRSLGDDLSQNDPPTLAFPSISTADFKFNHEKAAEIIVETVEEFMDKLGNGRLVLVDLSHGSKILSLVEAKAAKKNINSNKFFTFVGDITRLNSKGGLRCNVIANAANWRLKPGGGGVNAAIFSAAGPGLEVATKQEANSLHPGNALIVPLPSISPLFIREGVTHVIHVLGPNMNPQRPNYLDSDYDEGCKVLRAAYSSLFQGFVSIVEDQFKSVRGIHERLGPAPSESRKHSGDSPRSTFLSSDHKFKREDVQNSERSKKWKGSQDTAEVLNQNNNKTVQKVSKQWGSWAHALYNTAMHPEKHGDTVLEVSDDVVILNDIYAKAHKHLLVVARCEGLDQLDDLRREHLPLLRTMHALGLKWIDKFFHEDVSLVFRLGYHSAPSMRQLHLHVISQDFNSSHLKNKKHWNSFNTDFFRDSVDVIDEVSNHGKASIKDDESLISMELRCNRCRSAHPNIPKLKLHIAKCEAPFPSTLLQGGRLVLGPRNTASLP 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1020492 1024452 + evm.model.ptg000018l.547 HCH11g0068 553535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0068 758 FunFam Transcription factor bHLH140 12 181 - -
HCH11g0068 758 FunFam aprataxin isoform X2 554 734 - -
HCH11g0068 758 SUPERFAMILY Macro domain-like 334 468 IPR043472 -
HCH11g0068 758 Gene3D Leucine Aminopeptidase, subunit E, domain 1 325 481 IPR043472 -
HCH11g0068 758 ProSiteProfiles Macro domain profile. 335 596 IPR002589 -
HCH11g0068 758 MobiDBLite consensus disorder prediction 487 501 - -
HCH11g0068 758 Pfam Macro domain 371 453 IPR002589 -
HCH11g0068 758 Pfam C2HE / C2H2 / C2HC zinc-binding finger 678 732 IPR032566 -
HCH11g0068 758 MobiDBLite consensus disorder prediction 508 531 - -
HCH11g0068 758 FunFam Transcription factor bHLH140 328 475 - -
HCH11g0068 758 Gene3D Leucine Aminopeptidase, subunit E, domain 1 266 324 IPR043472 -
HCH11g0068 758 SUPERFAMILY Macro domain-like 277 317 IPR043472 -
HCH11g0068 758 Gene3D - 6 182 IPR027417 -
HCH11g0068 758 PANTHER APRATAXIN-RELATED 86 751 - GO:0000012(PANTHER)|GO:0003697(PANTHER)|GO:0003725(PANTHER)|GO:0005634(PANTHER)|GO:0030983(PANTHER)|GO:0033699(PANTHER)|GO:1990165(PANTHER)
HCH11g0068 758 MobiDBLite consensus disorder prediction 487 535 - -
HCH11g0068 758 MobiDBLite consensus disorder prediction 259 278 - -
HCH11g0068 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 169 IPR027417 -
HCH11g0068 758 Gene3D - 555 736 IPR036265 -
HCH11g0068 758 Pfam Scavenger mRNA decapping enzyme C-term binding 562 673 - -
HCH11g0068 758 ProSitePatterns HIT domain signature. 642 660 IPR019808 -
HCH11g0068 758 SUPERFAMILY HIT-like 543 717 IPR036265 -
HCH11g0068 758 Pfam AAA domain 25 152 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0068 K10863 - csv:101216867 1172.92