Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0084 ATGGAAGGACACAATCCTCATTCTCATCCCCATATTATTCATCATCATCATCAACAGCAGCAGCAGCAGCAGCTTCTTCATCAAAATATAATTCCTATCAACGTTGATCAAAGTGATAGATTTCCTCAATGGAGTTTACAAGAAACCAAGGAGTTTTTGATGATACGAGCCGAGCTCGATCAAAATTTCATGGAAACCAAACGCAACAAGCCTTTATGGGAACTTACTTCCTCCAAGATGAAGGAAAAGGGATTCAATCGTAGCCCTGAACAGTGTAAATGTAAATGGAAAAATCTCGTTACGCGTTATAAGGGCTGTGAAACAATAGAACCAGAAGTGTTGAGGCAGCAGTTTCCATTCTACACAGAACTGCAAACGATTTTCGCTGCAAGAATGCAAAGGATGCTATGGGCGGAAGCCGAGAGCGGCGCTAGCGGGTCGAAGAAGAAGACGGCGGCATCGATGGCTCTATCGTCGGACGAAGAGGAAGAGAATGAAGATAGCGACGGAGACACGAAAGTTATGAGTAGGAAGAAGAAGAAGAGTAAAAGCGGTGTAGGAGCCGGGGGTAGCGGAAATAGTAGTACAAGTAATCTGAAAGAGATGTTGGAGGAATTCATGAACCAACAAATGCAAATGGAGGTTCAATGGAGGGAAGCATTTGAGGCAAGAGAAAAGGAGAGGCAAATGAAGGAGATGGAATGGAGAAGAAATATGGAGGCATTGGAGCATGAGAGGATAATGATGGAGAGAAGATGGAGAGAGAGAGAGGAGCAAAGGAAGATGAGAGAGGAAGCTAGGGCTGAGAAAAGAGATGCTTTAATCACAGCTTTATTAAACAAGATTAGAAGAGAAGATCATATGTAG 867 43.25 MEGHNPHSHPHIIHHHHQQQQQQQLLHQNIIPINVDQSDRFPQWSLQETKEFLMIRAELDQNFMETKRNKPLWELTSSKMKEKGFNRSPEQCKCKWKNLVTRYKGCETIEPEVLRQQFPFYTELQTIFAARMQRMLWAEAESGASGSKKKTAASMALSSDEEEENEDSDGDTKVMSRKKKKSKSGVGAGGSGNSSTSNLKEMLEEFMNQQMQMEVQWREAFEAREKERQMKEMEWRRNMEALEHERIMMERRWREREEQRKMREEARAEKRDALITALLNKIRREDHM 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1114038 1115178 - evm.model.ptg000018l.531 HCH11g0084 553551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0084 288 MobiDBLite consensus disorder prediction 140 197 - -
HCH11g0084 288 FunFam Zinc finger and SCAN domain-containing 20 44 105 - -
HCH11g0084 288 Coils Coil 256 276 - -
HCH11g0084 288 CDD GT1 42 107 - -
HCH11g0084 288 ProSiteProfiles Myb-like domain profile. 44 100 IPR001005 -
HCH11g0084 288 PANTHER FI21293P1 8 284 - -
HCH11g0084 288 Gene3D - 44 105 - -
HCH11g0084 288 Pfam Myb/SANT-like DNA-binding domain 43 126 IPR044822 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0084 HCH-Chr11:1114038 HCH13g0906 HCH-Chr13:10625091 6.50E-11 dispersed
HCH6g1294 HCH-Chr6:47163654 HCH11g0084 HCH-Chr11:1114038 3.30E-23 transposed
HCH11g0084 HCH-Chr11:1114038 HCH9g0780 HCH-Chr9:5359628 2.80E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32518 PF13837 Myb_DNA-bind_4 2.70E-18 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0084 - - - 0.0