Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0087 ATGGATATCGCTTCCAGTCCCAAATCCGTCGAAGAAATCTTCAAAGATTACAGTGGTCGCCGTGCCGGTCTTGTTCGTGCTTTAACTCATGATGTGGATGAATTTTATGGCCTATGTGATCCAGACAAGGAAAATTTGTGTCTATATGGACATCCCAATGAAACATGGGAAGTGATTCTTCCAGCAGAAGAGGTTCCGCCGGAGCTTCCTGAGCCTGCCCTTGGAATCAACTTTGCAAGAGATGGCATGAATCAAAGAGATTGGCTTTCAATGGTTGCCGTACACAGCGATTCTTGGTTGCTCTCGGTGGCTTTCTATCTTGCAGCACGGCTTAACCGAAATGAAAGGAAACGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTCTGACAGAAAGGAAGCCTATTAAAGAGAAGCTCAGTGTAGATAGTGGAAGCAAATCACAAGGAAGTGCTAAGAGATCCAATGATGGACAGGTCAAAAGCAACCCGAGACTTGCTGATCAGAGCTTTGAGGAGGAAATAGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGCGAGAATTACAGTGGTGATGAGTTCTGGATCGGCTGTGACATCTGCGAGAGATGGTACCACGGAAAGTGTGTTAAGATAACACCTGCTAAGGCTGAGAGTATTAAACAATACAAGTGTCCATCTTGTAGCATGAAGAAGAGCAGGCAGTAG 720 44.72 MDIASSPKSVEEIFKDYSGRRAGLVRALTHDVDEFYGLCDPDKENLCLYGHPNETWEVILPAEEVPPELPEPALGINFARDGMNQRDWLSMVAVHSDSWLLSVAFYLAARLNRNERKRLFSLMNDLPTVFEVLTERKPIKEKLSVDSGSKSQGSAKRSNDGQVKSNPRLADQSFEEEIDEHSETLCGSCGENYSGDEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMKKSRQ 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1152436 1154630 - evm.model.ptg000018l.528 HCH11g0087 553554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0087 239 Pfam Alfin 9 134 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
HCH11g0087 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
HCH11g0087 239 PANTHER CPG BINDING PROTEIN 6 238 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
HCH11g0087 239 CDD PHD_AL_plant 185 235 IPR044104 -
HCH11g0087 239 MobiDBLite consensus disorder prediction 145 168 - -
HCH11g0087 239 SMART PHD_3 185 233 IPR001965 -
HCH11g0087 239 Pfam PHD-finger 186 232 IPR019787 -
HCH11g0087 239 MobiDBLite consensus disorder prediction 143 168 - -
HCH11g0087 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
HCH11g0087 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
HCH11g0087 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
HCH11g0087 239 FunFam PHD finger alfin-like protein 178 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0087 HCH-Chr11:1152436 HCH4g0514 HCH-Chr4:3390936 1.20E-87 dispersed
HCH1g0364 HCH-Chr1:50779798 HCH11g0087 HCH-Chr11:1152436 6.10E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32519 PF12165 Alfin 5.30E-67 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0087 K26274 - csv:101211970 447.203