Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0087 | ATGGATATCGCTTCCAGTCCCAAATCCGTCGAAGAAATCTTCAAAGATTACAGTGGTCGCCGTGCCGGTCTTGTTCGTGCTTTAACTCATGATGTGGATGAATTTTATGGCCTATGTGATCCAGACAAGGAAAATTTGTGTCTATATGGACATCCCAATGAAACATGGGAAGTGATTCTTCCAGCAGAAGAGGTTCCGCCGGAGCTTCCTGAGCCTGCCCTTGGAATCAACTTTGCAAGAGATGGCATGAATCAAAGAGATTGGCTTTCAATGGTTGCCGTACACAGCGATTCTTGGTTGCTCTCGGTGGCTTTCTATCTTGCAGCACGGCTTAACCGAAATGAAAGGAAACGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTCTGACAGAAAGGAAGCCTATTAAAGAGAAGCTCAGTGTAGATAGTGGAAGCAAATCACAAGGAAGTGCTAAGAGATCCAATGATGGACAGGTCAAAAGCAACCCGAGACTTGCTGATCAGAGCTTTGAGGAGGAAATAGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGCGAGAATTACAGTGGTGATGAGTTCTGGATCGGCTGTGACATCTGCGAGAGATGGTACCACGGAAAGTGTGTTAAGATAACACCTGCTAAGGCTGAGAGTATTAAACAATACAAGTGTCCATCTTGTAGCATGAAGAAGAGCAGGCAGTAG | 720 | 44.72 | MDIASSPKSVEEIFKDYSGRRAGLVRALTHDVDEFYGLCDPDKENLCLYGHPNETWEVILPAEEVPPELPEPALGINFARDGMNQRDWLSMVAVHSDSWLLSVAFYLAARLNRNERKRLFSLMNDLPTVFEVLTERKPIKEKLSVDSGSKSQGSAKRSNDGQVKSNPRLADQSFEEEIDEHSETLCGSCGENYSGDEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMKKSRQ | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1152436 | 1154630 | - | evm.model.ptg000018l.528 | HCH11g0087 | 553554 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0087 | 239 | Pfam | Alfin | 9 | 134 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
HCH11g0087 | 239 | ProSiteProfiles | Zinc finger PHD-type profile. | 183 | 235 | IPR019787 | - | |
HCH11g0087 | 239 | PANTHER | CPG BINDING PROTEIN | 6 | 238 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
HCH11g0087 | 239 | CDD | PHD_AL_plant | 185 | 235 | IPR044104 | - | |
HCH11g0087 | 239 | MobiDBLite | consensus disorder prediction | 145 | 168 | - | - | |
HCH11g0087 | 239 | SMART | PHD_3 | 185 | 233 | IPR001965 | - | |
HCH11g0087 | 239 | Pfam | PHD-finger | 186 | 232 | IPR019787 | - | |
HCH11g0087 | 239 | MobiDBLite | consensus disorder prediction | 143 | 168 | - | - | |
HCH11g0087 | 239 | SUPERFAMILY | FYVE/PHD zinc finger | 174 | 237 | IPR011011 | - | |
HCH11g0087 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 183 | 233 | IPR013083 | - | |
HCH11g0087 | 239 | ProSitePatterns | Zinc finger PHD-type signature. | 186 | 232 | IPR019786 | - | |
HCH11g0087 | 239 | FunFam | PHD finger alfin-like protein | 178 | 234 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0087 | HCH-Chr11:1152436 | HCH4g0514 | HCH-Chr4:3390936 | 1.20E-87 | dispersed | |
HCH1g0364 | HCH-Chr1:50779798 | HCH11g0087 | HCH-Chr11:1152436 | 6.10E-111 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32519 | PF12165 | Alfin | 5.30E-67 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0087 | K26274 | - | csv:101211970 | 447.203 |