Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0094 ATGGATTCAGAACAAGGAAGCTTCATTTCTGAAAACGGCGTCGTCAGAAGTTTCTCAAGGCACGGCCGTACGGCGCACAACATGTCGTCCTCGTCGTTGCGCAAAAAGTCCGATTTGACCCTCGTTTCCAAGGTTCGTTTCGTTTGCCTCAGGCTGCTTCTTGCGAATCTCCAGGAGGTCCTTTTCGGAACTAAACTTTGGGTCCTTTTTCCGGCGATTCCTCTCGCCGTTTTCGTCCACTCTTATGGCTTCGCTAGCGGGTGGGTTTTCAGTCTTAGCTTAATGGGAATAGCTCCACTTGCTGAACGTGTTAGCTTCATGACCGAACAAATCGCCTATTTCATCGGTCCAACAGTGGGAGGGTTAATGAATGCGACATGTGGGAATGCGACGGAGCTTATAATTGCAATTTTTGCACTTCGCAATCAAAATATTGAGTTGGTGAAGTTTTCTCTTTTGGGTTCTATTCTTTCAAATCTCCTTCTTGTTCTTGGATCCTCTCTCTTCTTTTGTGGCATCCTCAATCTTAAATCACCACAATTATATGACCGAAGACAAGCAGAAGTGAATTCTCACATGCTGCAATTATCACTACTATGCCTTTCGCTTCCCATGTTATTCCCTTACGCCGGAGGTTCAGGCTCCTTCTCCGTCGCCGGCGCCGGCGACGGAGTCGCTGCACTGCAATTATCAAGAGTGAGCAGTATAGTGATGCTCATAGCCTACGTCGCTTACTTAATCTTTCAGCTATGGACTCATCGTCGATTGTTTGAATCAGAAGAGGTGTCCGACGACGACGGCGACGTGGTGGAAGATGCTCCGGCAATAGGGATGTGGAGCGCCGTCGTGTGGTTGGTGGGAATGACTATTCTTATTGCTTTATTGTCGGAGTATGTGGTGGCTACGATTGAGGATGCATCAAGATCTTGGGGTTTATCAGTAGGATTCCTTAGTATAATCCTACTACCAATTGTTGGAAATGCAGCTGAGCATGCAGGAGCAGTCTTATTTGCTTCTAAGAACAAATTGGATATAACCCTAGGTGTTGCCTTAGGATCTGCAACTCAAATTTCCATGTTTGTGGTTCCTTTGTGTGTGGTTCTTGCTTGGATTATGGGAGTTAATATGGATCTTGATTTCAATCTCCTTGAAACTGCCTCACTTGCTTTCGCAATCATGGCTTCCTCTTCCGTTTTACAGGATGGAAGTTCTCACTACATTAAAGGACTGGTTCTTCTCCTCTTCTACGTTGTCATTGCAACATGTTTTTTCCTATCCAATAAACCTTCGGTACGAGTGACGCAATTCCATCACAGCTTCCCTTTTTACAAGACACGTCATCTGAATCGAATATCACGAAATCCAATGAGATTTCAGAATTCACTTTACTGTGACGGTAGTCGGTGA 1407 45.27 MDSEQGSFISENGVVRSFSRHGRTAHNMSSSSLRKKSDLTLVSKVRFVCLRLLLANLQEVLFGTKLWVLFPAIPLAVFVHSYGFASGWVFSLSLMGIAPLAERVSFMTEQIAYFIGPTVGGLMNATCGNATELIIAIFALRNQNIELVKFSLLGSILSNLLLVLGSSLFFCGILNLKSPQLYDRRQAEVNSHMLQLSLLCLSLPMLFPYAGGSGSFSVAGAGDGVAALQLSRVSSIVMLIAYVAYLIFQLWTHRRLFESEEVSDDDGDVVEDAPAIGMWSAVVWLVGMTILIALLSEYVVATIEDASRSWGLSVGFLSIILLPIVGNAAEHAGAVLFASKNKLDITLGVALGSATQISMFVVPLCVVLAWIMGVNMDLDFNLLETASLAFAIMASSSVLQDGSSHYIKGLVLLLFYVVIATCFFLSNKPSVRVTQFHHSFPFYKTRHLNRISRNPMRFQNSLYCDGSR 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1180591 1188939 + evm.model.ptg000018l.521 HCH11g0094 553561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0094 468 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 17 429 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
HCH11g0094 468 NCBIfam calcium/proton exchanger 71 424 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
HCH11g0094 468 Gene3D - 117 264 IPR044880 -
HCH11g0094 468 Gene3D - 268 425 IPR044880 -
HCH11g0094 468 Pfam Sodium/calcium exchanger protein 281 424 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0094 468 Pfam Sodium/calcium exchanger protein 88 251 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0094 468 FunFam Vacuolar cation/proton exchanger 269 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0094 HCH-Chr11:1180591 HCH6g0027 HCH-Chr6:437090 1.50E-89 dispersed
HCH2g0639 HCH-Chr2:50201946 HCH11g0094 HCH-Chr11:1180591 2.00E-94 transposed
HCH11g0094 HCH-Chr11:1180591 HCH3g1442 HCH-Chr3:52369575 1.20E-115 wgd
HCH11g0094 HCH-Chr11:1180591 HCH9g0774 HCH-Chr9:5290648 3.00E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0094 K07300 - csv:101213176 556.984